Search bioRxiv⌕ Search

Biology subjects

Leung, B.

Publications and source records attributed to Leung, B..

13 recordsLinked to original sources

Where Climate Change and Sampling Bias Collide: Challenges of Predicting Biodiversity Change in Canada

Anticipating biodiversity change is critical in rapidly warming regions, yet challenging because these areas often coincide with poor sampling. Data gaps are widely understood to interfere with species distribution models (SDMs), but this is difficult to detect with biased data. We test SDM bias-correction methods with a new occurrence-checklist-range (OCR) validation approach and evaluate prediction discrepancy for [~]700 Canadian terrestrial vertebrate species. We found: 1) bias-correction improves model performance against independent (checklist and range) data, but not against typical occurrence cross-validation, 2) predicted richness differed among methods (up to 2.7-fold), especially in the north, and 3) counterintuitively, future projections varied less (by 28%) because well-sampled climate space will shift north. Our findings suggest potential widespread overconfidence in SDM predictions for the unevenly sampled world, with implications for the growing reliance on biodiversity estimates for planning and policy. OCR validation and methodological discrepancy measurements are relatively easy ways to address this.

ecology↗

Irx3/5 define the cochlear sensory domain and regulate vestibular and cochlear sensory patterning in the mammalian inner ear

The mammalian inner ear houses the vestibular and cochlear sensory organs dedicated to sensing balance and sound, respectively. These distinct sensory organs arise from a common prosensory region, but the mechanisms underlying their divergence remain elusive. Here, we showed that two evolutionarily conserved homeobox genes, Irx3 and Irx5, are required for the patterning and segregation of the saccular and cochlear sensory domains, as well as for the formation of auditory sensory cells. Irx3/5 were highly expressed in the cochlea, their deletion resulted in a significantly shortened cochlea with a loss of the ductus reuniens that bridged the vestibule and cochlea. Remarkably, ectopic vestibular hair cells replaced the cochlear non-sensory structure, the Greater Epithelial Ridge. Moreover, most auditory sensory cells in the cochlea were transformed into hair cells of vestibular identity, with only a residual organ of Corti remaining in the mid-apical region of Irx3/5 double knockout mice. Conditional temporal knockouts further revealed that Irx3/5 are essential for controlling cochlear sensory domain formation before embryonic day 14. Our findings demonstrate that Irx3/5 regulate the patterning of vestibular and cochlear sensory cells, providing insights into the separation of vestibular and cochlear sensory organs during mammalian inner ear development.

developmental biology↗

Microbial aerotrophy enables continuous primary production in diverse cave ecosystems

Most aerated cave ecosystems are assumed to be oligotrophic given they receive minimal inputs of light energy. Diverse microorganisms have nevertheless been detected within caves, though it remains unclear what strategies enable them to meet their energy and carbon needs. Here we determined the processes and mediators of primary production in aerated limestone and basalt caves through paired metagenomic and biogeochemical profiling. Based on 1458 metagenome-assembled genomes, over half of microbial cells in caves encode enzymes to use atmospheric trace gases as energy and carbon sources. The most abundant microbes in these systems are chemosynthetic primary producers, notably the novel gammaproteobacterial methanotrophic order Ca. Methylocavales and two uncultivated actinobacterial genera predicted to grow on atmospheric hydrogen, carbon dioxide, and carbon monoxide. In situ and ex situ biogeochemical and isotopic measurements consistently confirmed that these gases are rapidly consumed at rates sufficient to meet community-wide energy needs and drive continual primary production. Conventional chemolithoautotrophs, which use trace lithic compounds such as ammonium and sulfide, are also enriched and active alongside these trace gas scavengers. These results indicate that caves are unique in both their microbial composition and the biogeochemical processes that sustain them. Based on these findings, we propose caves are the first known ecosystems where atmospheric trace gases primarily sustain growth rather than survival and define this process as aerotrophy. Cave aerotrophy may be a hidden process supporting global biogeochemistry.

microbiology↗

Rapid evaluation of habitat connectivity change to safeguard multispecies persistence in human-transformed landscapes

Protecting habitat connectivity in fragmented landscapes is essential for safeguarding biodiversity and natures contributions to people. Following the Post-2020 Kunming-Montreal Global Biodiversity Framework (KM-GBF) of the Convention on Biological Diversity (CBD) there is a clear science-policy need to assess habitat connectivity and track its change over time to inform conservation planning. In response to this need we describe an analytical, multi-indicator and multispecies approach for the rapid assessment of habitat connectivity at fine spatial grain and at the extent of an entire ecoregion. Out of 69 connectivity indicators we found through a literature review, we identified a key-set of nine indicators that align with the Essential Biodiversity Variables framework and that are suitable to guide rapid action for connectivity and conservation targets in the KM-GBF. Using these selected indicators, we mapped and evaluated connectivity change from 2011 to 2021 across the ecoregion of the St-Lawrence Lowlands in Quebec ([~]30,000 km2) for seven ecoprofile species representing regional forest habitat needs. For the majority of these ecoprofile species, trends over the last decade indicate a decline in effective connected area and metapopulation carrying capacity, mainly via a division of large contiguous habitat into smaller fragments, whereas total habitat area largely remained unchanged. These results highlight that trends in habitat area and connectivity are not necessarily correlated and the urgent need to conserve and restore connectivity in the St-Lawrence Lowlands, in order to meet regional targets under the KM-GBF. Our general approach enables a comprehensive evaluation of connectivity for regional spatial planning for biodiversity. We develop an R-tool to support this analysis and that can be extended to other conservation planning efforts for connectivity.

ecology↗

High fat diet allows food-predictive stimuli to energize action performance in the absence of hunger, without distorting insulin signaling on accumbal cholinergic interneurons.

Obesity can disrupt how food-predictive stimuli control action performance and selection. These two forms of control recruit cholinergic interneurons (CIN) located in the nucleus accumbens core (NAcC) and shell (NAcS), respectively. Given that obesity is associated with insulin resistance in this region, we examined whether interfering with CIN insulin signaling disrupts how food-predictive stimuli control actions. To interfere with insulin signaling we used a high-fat diet (HFD) or genetic excision of insulin receptor (InsR) from cholinergic cells. HFD left intact the capacity of food-predictive stimuli to energize performance of an action earning food when mice were tested hungry. However, it allowed this energizing effect to persist when the mice were tested sated. This persistence was linked to NAcC CIN activity but was not associated with distorted CIN insulin signaling. Accordingly, InsR excision had no effect on how food-predicting stimuli control action performance. Next, we found that neither HFD nor InsR excision altered the capacity of food-predictive stimuli to guide action selection. Yet, this capacity was associated with changes in NAcS CIN activity. These results indicate that insulin signaling on accumbal CIN does not modulate how food-predictive stimuli control action performance and selection. However, they show that HFD allows food-predictive stimuli to energize performance of an action earning food in the absence of hunger.

neuroscience↗

European scenarios for future biological invasions

O_LIInvasive alien species are one of the major threats to global biodiversity, ecosystem integrity, natures contribution to people and human health. While scenarios about potential future developments have been available for other global change drivers for quite some time, we largely lack an understanding of how biological invasions might unfold in the future across spatial scales. C_LIO_LIBased on previous work on global invasion scenarios, we developed a workflow to downscale global scenarios to a regional and policy-relevant context. We applied this workflow at the European scale to create four European scenarios of biological invasions until 2050 that consider different environmental, socio-economic and socio-cultural trajectories, namely the European Alien Species Narratives (Eur-ASNs). C_LIO_LIWe compared the Eur-ASNs with their previously published global counterparts (Global-ASNs), assessing changes in 26 scenario variables. This assessment showed a high consistency between global and European scenarios in the logic and assumptions of the scenario variables. However, several discrepancies in scenario variable trends were detected that could be attributed to scale differences. This suggests that the workflow is able to capture scale-dependent differences across scenarios. C_LIO_LIWe also compared the Global- and Eur-ASNs with the widely used Global and European Shared Socioeconomic Pathways (SSPs), a set of scenarios developed in the context of climate change to capture different future socio-economic trends. Our comparison showed considerable divergences in the scenario space occupied by the different scenarios, with overall larger differences between the ASNs and SSPs than across scales (global vs. European) within the scenario initiatives. C_LIO_LIGiven the differences between the ASNs and SSPs, it seems that the SSPs do not adequately capture the scenario space relevant to understanding the complex future of biological invasions. This underlines the importance of developing independent, but complementary, scenarios focused on biological invasions. The downscaling workflow we presented and implemented here provides a tool to develop such scenarios across different regions and contexts. This is a major step towards an improved understanding of all major drivers of global change including biological invasions. C_LI

ecology↗

A scenario-guided strategy for the future management of biological invasions

Future dynamics of biological invasions are highly uncertain because they depend on multiple environmental, societal and socio-economic drivers. We adopted a qualitative scenario approach to explore the future of invasive alien species (IAS) in Europe and created an overall strategy for their management that considers different plausible future developments. The scenarios and strategy were developed during two online workshops with a multidisciplinary team of experts. First, we downscaled four global scenarios of biological invasions to the European level. Second, we developed a management strategy structured into 19 goals that cover a broad array of IAS-related topics (i.e. policy, research, public awareness and biosecurity), and provided solutions for achieving these goals considering the European scenarios. Third, we identified four interrelated recommendations around which any long-term strategy for managing IAS in Europe can be structured: (i) a European biosecurity regime, (ii) a dedicated communication strategy, (iii) data standardization and management tools, and (iv) a monitoring and assessment system. Finally, we identified the feasibility of the IAS management strategy, finding strong differences among the four scenarios. High levels of technological development, public environmental awareness, and effectiveness of IAS policies facilitated the implementation of the overall management strategy. Together, our results indicate that it is time for a new management of biological invasions in Europe based on a more integrative perspective across sectors and countries to be better prepared for future challenges.

ecology↗

Cognitive effects of thalamostriatal degeneration are ameliorated by normalizing striatal cholinergic activity

The loss of neurons in parafascicular thalamus (Pf) and of their inputs to dorsomedial striatum (DMS) are associated with Lewy body disease (LBD) and Parkinsons disease dementia (PDD) and have been linked to the effects of neuroinflammation. In rats, these inputs regulate the function of striatal cholinergic interneurons (CINs) that are necessary for the flexible encoding of the action-outcome (AO) associations for goal-directed action. We found that these inputs modify the encoding, not retrieval, of new AO associations and cause burst-pause firing of CINs in the DMS during AO remapping. These adaptive effects were abolished by neuroinflammation in the Pf, resulting in the loss of goal-directed control when the rats were required to update AO associations after a change in contingency. We found that the neuronal and behavioral deficits induced by inflammation in the Pf were rescued by administration of selegiline, a MAO-B inhibitor that we found also enhances ATPase activity in CINs, suggesting a potential treatment for cognitive deficits associated with inflammation affecting the function of midline thalamic nuclei and related structures.

neuroscience↗

Projecting the futures of plant traits across habitats in Central Europe

Many plant traits covary with environmental gradients, reflecting shifts in adaptive strategies under changing conditions and thus providing information about potential consequences of future environmental change for vegetation and ecosystem functioning. Despite extensive efforts to map trait-environment relationships, the evidence remains heterogeneous and often conflicting, partially because of insufficient consideration of distinct trait syndromes for certain growth forms and habitats. Moreover, it is unclear whether traits of non-native and native plant taxa respond similarly to environmental gradients, limiting our ability to assess the consequences of future plant invasions. Here, using comprehensive data for Germany and the Czech Republic and a Bayesian multilevel modeling framework, we assessed relationships between three major plant traits (maximum height, Hmax; specific leaf area, SLA; and seed mass, SM) and environmental factors (7 climate variables and percentage of urban land cover) for native and non-native woody and herbaceous plant assemblages across six broad habitat types. We projected the trait change in these assemblages under future environmental change scenarios until 2081-2100 and quantified the change in trait difference between native and non-native plants. Our models depicted multiple trait-environment relationships, with several important differences attributed to biogeographical status and woodiness within and across habitat types. The overall magnitude of trait change is projected to be greater for non-native than native taxa and to increase under more extreme scenarios. Native woody plant assemblages may generally experience an increase across all three traits, whereas woody non-natives may decline in Hmax and increase in SLA and SM. Herbaceous Hmax is expected to increase and SLA to decrease in most habitats. The obtained trait projections highlight the conditions under which non-native plants may prevail over natives and vice versa and can serve as a starting point for projecting future changes in ecosystem functions and services.

ecology↗

Urban tree deaths from invasive alien forest insects in the United States, 2020-2050

O_LIUrban trees are important nature-based solutions for future wellbeing and livability but are at high risk of mortality from insect pests. In the United States (US), 82% of the population live in urban settings and this number is growing, making urban tree mortality a matter of concern for most of its population. Until now, the magnitudes and spatial distributions of risks were unknown. C_LIO_LIHere, we combine new models of street tree populations in [~]30,000 US communities, species-specific spread predictions for 57 invasive insect species, and estimates of tree death due to insect exposure for 48 host tree genera. C_LIO_LIWe estimate that 1.4 million street trees will be killed by invasive insects from 2020 through 2050, costing an annualized average of US$ 30M. However, these estimates hide substantial variation: 23% of urban centers will experience 95% of all insect-induced mortality. Further, 90% of all mortality will be due to emerald ash borer (Agrilus planipennis, EAB), which is expected to kill virtually all ash trees (Fraxinus spp.) in >6000 communities. C_LIO_LIWe define an EAB high-impact zone spanning 902,500km2, largely within the southern and central US, within which we predict the death of 98.8% of all ash trees. "Mortality hotspot cities" include Milwaukee, WI; Chicago, IL; and New York, NY. C_LIO_LIWe identify Asian wood borers of maple and oak trees as the highest risk future invaders, where a new establishment could cost US$ 4.9B over 30 years. C_LIO_LIPolicy implications: To plan effective mitigation, managers must know which tree species in which communities will be at the greatest risk, as well as the highest-risk insects. We provide the first country-wide, spatial forecast of urban tree mortality due to invasive insect pests. This framework identifies dominant pest insects and spatial impact hotspots, which can provide the basis for spatial prioritization of spread control efforts such as quarantines and biological control release sites. Our results highlight the need for EAB early-detection efforts as far from current infestations as Seattle, WA. Further, these findings produce a list of biotic and spatiotemporal risk factors for future high-impact US urban forest insect pests. C_LI

ecology↗

Capacity of countries to reduce biological invasions

The extent and impacts of biological invasions on biodiversity are largely shaped by an array of socio-ecological predictors, which exhibit high variation among countries. Yet a global synthetic perspective of how these factors vary across countries is currently lacking. Here, we investigate how a set of five socio-ecological predictors (Governance, Trade, Environmental Performance, Lifestyle and Education, Innovation) explain i) country-level established alien species (EAS) richness of eight taxonomic groups, and ii) country capacity to prevent and manage biological invasions and their impacts. Trade and Governance together best predicted the average EAS richness, increasing variance explained by up to 54% compared to models based on climatic and spatial variables only. Country-level EAS richness increased strongly with Trade, whereas high level of Governance resulted in lower EAS richness. Historical (1996) levels of Governance and Trade better explained response variables than current (2015) levels. Thus, our results reveal a historical legacy of these two predictors with profound implications for the future of biological invasions. We therefore used Governance and Trade to define a two-dimensional socio-economic space in which the position of a country captures its capacity to address issues of biological invasions. Our results provide novel insights into the complex relationship between socio-ecological predictors and biological invasions. Further, we highlight the need for designing better policies and management measures for alien species, and for integrating biological invasions in global environmental scenarios.

ecology↗

Alternative futures for global biological invasions

Scenario analysis has emerged as a key tool to analyze complex and uncertain future socio-ecological developments. However, current global scenarios (narratives of how the world may develop) have neglected biological invasions, a major threat to biodiversity and the economy. We used a novel participatory process to develop a diverse set of global biological invasion scenarios spanning a wide breadth of plausible global futures through 2050. We adapted the widely used "two axes" scenario analysis approach to develop four families of four scenarios each, resulting in 16 scenarios that were later clustered into four contrasting sets of futures. Our analysis highlighted that socio-economic developments and changes in sustainability policies and lifestyle have the potential to shape biological invasions, in addition to well-known ecological drivers, such as climate and human land use change. Our scenarios align fairly well with the recently developed shared socio-economic pathways, but the factors that drive differences in biological invasions are underrepresented there. Including these factors in global scenarios and models is essential to adequately consider biological invasions in global environmental assessments, and obtain a more integrative picture of future socio-ecological developments.

ecology↗

Size uniformity of animal cells is actively maintained by a p38 MAPK-dependent regulation of G1-length

Animal cells within a tissue typically display a striking regularity in their size. To date, the molecular mechanisms that control this uniformity are still unknown. We have previously shown that size uniformity in animal cells is promoted, in part, by size-dependent regulation of G1 length. To identify the molecular mechanisms underlying this process, we performed a large-scale small molecule screen and found that the p38 MAPK pathway is involved in coordinating cell size and cell cycle progression. Small cells display higher p38 activity and spend more time in G1 than larger cells. Inhibition of p38 MAPK leads to loss of the compensatory G1 length extension in small cells, resulting in faster proliferation, smaller cell size and increased size heterogeneity. We propose a model wherein the p38 pathway responds to changes in cell size and regulates G1 exit accordingly, to increase cell size uniformity.\n\nOne-sentence summaryThe p38 MAP kinase pathway coordinates cell growth and cell cycle progression by lengthening G1 in small cells, allowing them more time to grow before their next division.

cell biology↗