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Lakhotia, S. C.

Publications and source records attributed to Lakhotia, S. C..

11 recordsLinked to original sources

Sex specific systemic effects of sev-Gal4 driven activated Ras expression mediated through hnRNPs in Drosophila

Following our laboratorys earlier observations on systemic damage inflicted by sev-Gal4 driven activated Ras (sev>RasV12) over-expression in Drosophila larval eye discs, we now show that sev>RasV12 expressing males suffer enhanced eye roughening and pupal death than female sibs because the former have significantly greater Ras levels in ommatidial cells than in female counterpart. In normally developing ommatidial cells, TBPH/TDP-43 was more abundant in cytoplasm in male than in female eye discs. The sev>RasV12 expression reduced nuclear TBPH in female eye discs but caused no apparent change in males. Caz/Fus, an interacting partner of TBPH, was significantly downregulated in sev>RasV12 eye discs, more so in males. Significant reduction in the microtubule binding protein Futsch in eye discs of sev>RasV12 larvae of either sexes but female-specific elevation of Fas2 appears to be due to the above normal developmental differences in TBPH and Caz in female and male ommatidial cells and because Sxl, the master regulator of sex-determination, is present only in females. In view of known auto-regulatory loop between Fas2 and Ras, we suggest that elevated levels of Fas2 cause levels of Ras to be much less elevated in sev>RasV12 female eye discs than in male sibs. This results in greater local and systemic damage in males. These findings have general and clinical relevance since perturbed Ras signaling is a major factor in several diseases, including cancer.

developmental biology↗

The sev-GAL4 driver in Drosophila melanogaster does not express in the eight pairs of dorso-medial and some other neurons in larval ventral ganglia: A correction

The sev-Gal4 driver is widely used in Drosophila to express the target gene in specific subsets of cells in ommatidial units of developing eye. A 2015 report (Ray & Lakhotia, J Genet 94, 407-416) from our laboratory claimed that besides the eye disc cells, the Sev-Gal4 (Bloomington stock 5793) also expresses in 8 pairs of dorso-medial neurons and some other cells in larval and early pupal ventral ganglia. The current study reveals that this claim was incorrect since the UAS-GFP transgene in Bloomington stock 1521 used as reporter in the 2015 study expresses in the 8 pairs of dorso-medial neurons and some other cells in larval and early pupal ventral ganglia even in undriven condition. The UAS-eGFP reporter in the BL-5431 stock, however, does not express in these ganglia, neither in undriven nor in sev-Gal4 driven condition. This was also confirmed by the G-TRACE cell lineage study. Present results suggest that only four dorsal-midline cells in ventral ganglia and a cluster of cells in central region of brain hemisphere, besides the earlier known cells in eye disc and optic lobe of brain, express the sev-Gal4 transgene in the stock 5793. The essentiality of examining undriven expression of a transgene cannot be under-emphasized.

developmental biology↗

Different roles of dFOXO and HSF in spatio-temporal dynamics of stress-inducible Hsp70 in lgl-yorkie & lgl-Ras driven epithelial tumours in Drosophila

Oncogenic stress responses are critical modulators of tumour cell adaptation to hostile microenvironments and clonal dynamics. The evolutionarily conserved Hsp70 chaperone promotes tumour cell survival by suppressing apoptosis and facilitating metastatic progression. However, the temporal order and regulation of its expression in neoplastic tumours remains ill-defined. Here, we show a non-canonical regulation of Hsp70 expression during neoplastic transformation in the Drosophila wing epithelium. The malignant lgl ykiOE MARCM clones exhibited a delayed and progressive induction of Hsp70, tightly correlated with clonal expansion and tissue invasion. Loss of Hsp70 function in developing lgl ykiOE clones suppressed tumour growth in both larval wing discs and allograft assays, underscoring its significant role in tumour fitness and growth. We identify a non-canonical pathway where ROS-activated JNK signalling drives FOXO-dependent induction of Hsp70, bypassing HSF/Hif1, to promote tumour growth and invasion. Genetic disruption of Nox or JNK abrogated Hsp70 induction and curtailed tumour expansion. Stress adaptation and malignancy of developing lgl ykiOE epithelial tumour thus require Hsp70 as a redox-responsive, temporally regulated effector of the JNK-FOXO axis.

cell biology↗

The multiple lncRNAs encoding hsrω gene is essential for oogenesis in Drosophila

In the background of limited studies on noncoding RNAs in Drosophila oogenesis, we show developmentally active hsr{omega} lncRNA gene to be essential in oogenesis and ovulation. The near-null hsr{omega}66 females, and ovaries with down- or up-regulated hsr{omega} display varyingly perturbed oogenesis including fewer ovarioles, high apoptosis, poor actin nuclear-cage (stage 10), low Cut levels in late chambers and, finally ovulation block. Restoration of normal oogenesis following targeted expression of hsr{omega}-RH transcript in hsr{omega}66 confirmed hsr{omega} mis-function to underlie these defects. Genetic interaction studies showed varying modulation of ovarian defects following mis-expression of Cut, and TBPH/TDP-43 or Caz/dFUS hnRNPs by altered hsr{omega} transcript levels. Dietary supplement of ecdysone to hsr{omega}66 females, which have reduced ecdysone titer, substantially restored normal oogenesis. Our results show for the first time that the multiple lncRNA producing hsr{omega} gene, which interacts with diverse hnRNPs and other regulatory molecules, As expected of a gene with key roles in dynamics of various hnRNPs, interactions between down or upregulated hsr{omega} transcripts and various oogenesis regulators are not linear. Summary StatementThe multiple lncRNA producing hsr{omega} gene critically impacts Drosophila oogenesis at multiple steps through intra- and inter-organ signaling.

developmental biology↗

Transgenic resources for functional studies on the hsrω gene in Drosophila

The hsr{omega} gene of Drosophila melanogaster, an early discovered non-coding developmentally active and stress-inducible gene, has pleiotropic actions through its multiple nuclear and cytoplasmic non-coding transcripts. With a view to understand this diverse functions and mechanisms of actions of this gene, we generated a series of transgenic lines for over-expression or RNAi of different transcripts and CRISPR-Cas9 mediated deletion alleles. These are described here.

genetics↗

Beneficial effects of two Ayurvedic formulations, Saraswata Ghrita and Kalyanaka Ghrita on survival and on toxic aggregates in Drosophila models of Huntington's and Alzheimer's disease

In order to understand the health promotive, rejuvenative and disease preventive approach of the Ayurvedic system of medicine in the light of current principles, we examined two Rasayana formulations, viz., Kalayanaka Ghrita (KG) and Saraswata Ghrita (SG) for their effects in Alzheimers (AD) and Huntingtons (HD) neurodegenerative disease models of Drosophila. Initial experiments involving feeding of wild type flies on food supplemented with 0.05%, 0.25% and 0.5% (w/v) KG or SG revealed 0.05% to be without any adverse effect while higher concentrations caused dose-dependent reduction in pupation frequency and adult life span in wild type flies. Rearing GMR-GAL4>127Q (HD model) and ey-GAL4>A{beta}42 (AD model) larvae and adults on 0.05% or 0.25% SG or KG supplemented food enhanced the otherwise significantly reduced larval lethality and enhanced their median life span, with the 0.25% SG or KG concentrations being less effective than the 0.05%. In parallel with the better larval survival and enhanced adult life span, feeding the HD and AD model larvae on either of the Ghrita supplemented food (0.05% and 0.25%) substantially reduced the polyQ aggregates or amyloid plaques, respectively, in the larval eye discs. The present first in vivo organismic model study results have clinical implications for the increasing burden of age-associated dementia and neurodegenerative diseases like AD and HD in human populations.

neuroscience↗

Generation of tumors in wing imaginal discs of Drosophila melanogaster third instar larvae to study temporal and spatial patterns of expression of major heat shock proteins

Cancer cells generally overexpress heat shock proteins (Hsps), the major components of cellular stress response, to overcome and survive the diverse stresses. However, the specific roles of Hsps in initiation and establishment of cancers remain unclear. Using loss of Lgl-mediated epithelial tumorigenesis in Drosophila, we induced tumorigenic somatic clones of different genetic backgrounds to examine the temporal and spatial expression and roles of major heat shock proteins in tumor growth. The constitutively expressed Hsp83, Hsc70 (heat shock cognate), Hsp60 and Hsp27 show elevated levels in all cells of the tumorigenic clone since early stages, which persists till their transformation. However, the stress-inducible Hsp70 is expressd only in a few cells at later stage of established tumorous clones that show high F-actin aggregation. Intriguingly, levels of heat shock factor (HSF), the master regulator of Hsps, remain unaltered in these tumorous cells and its down-regulation does not affect tumorigenic growth of lgl- clones overexpressing Yorkie, although down-regulation of Hsp83 prevents their survival and growth. Interestingly, overexpression of HSF or Hsp83 in lgl- cells makes them competitively successfully in establishing tumorous clones. These results show that the major constitutively expressed Hsps, but not the stress-inducible Hsp70, are involved in early as well as late stages of epithelial tumors and their elevated expression in lgl- clones co-overexpressing Yorkie is independent of HSF.

cancer biology↗

Stress-responsive Long Non-coding RNA, hsrω, is a genetic modifier of JNK-dependent Intrinsic Tumor Suppression in Drosophila

Host genetics is known to influence cancer susceptibility. However, the specific candidate genes and molecular mechanisms that confer resistance remain poorly understood. Here, we demonstrate the power of haploinsufficiency screen to uncover host genetic regulators of cancer in Drosophila and identify the long noncoding RNA (lncRNA) hsr{omega}, a structural component of nuclear biomolecular condensate known as omega speckles, as a key host cancer susceptibility locus. Loss of hsr{omega} disrupts proteostasis and cell fitness, while its haploinsufficiency accelerates epithelial tumor progression driven by loss of the Lethal giant larvae (Lgl) tumor suppressor. Further validating the breadth of this screening strategy, we independently identified Drosophila STING (innate immunity) and Keap1 (oxidative stress defense) as genetic modifiers of cancer. Moreover, in humans, copy number variations (CNV) in these genes and Sat III (a functional human homolog of hsr{omega}) correlate with poor cancer prognosis, thereby revealing conserved stress pathways as potential host genetic susceptibility regulators.

cancer biology↗

Conservation of gene architecture and domains amidst sequence divergence in the hsrω lncRNA gene across the Drosophila genus

The developmentally active and cell-stress responsive hsr{omega} locus in Drosophila melanogaster carries two exons, one omega intron, one short translatable open reading frame ORF{omega}, long stretch of unique tandem repeats and an overlapping mir-4951 near its 3 end. It produces multiple lncRNAs using two transcription start and four termination sites. Earlier studies revealed functional conservation in several Drosophila species but with little sequence conservation, in three experimentally examined species, of ORF{omega}, tandem repeat and other regions but ultra-conservation of 16nt at 5 and 60nt at 3 splice-junctions of the omega intron. Present bioinformatic study, using the splice-junction landmarks in Drosophila melanogaster hsr{omega}, identified orthologues in publicly available 34 Drosophila species genomes. Each orthologue carries the short ORF{omega}, ultra-conserved splice junctions of omega intron, repeat region, conserved 3-end located mir-4951, and syntenic neighbours. Multiple copies of conserved nonamer motifs are seen in the tandem repeat region, despite a high variability in repeat sequences. Intriguingly, only the intron sequences in different species show evolutionary relationships matching the general phylogenetic history in the genus. Search in other known insect genomes did not reveal sequence homology although a locus with similar functional properties is suggested in Chironomus and Ceratitis species. Amidst the high sequence divergence, the conserved organization of exons, ORF{omega} and omega intron in this genes proximal part and tandem repeats in distal part across the Drosophila genus is remarkable and possibly reflects functional importance of higher order structure of hsr{omega} lncRNAs and the small Omega peptide.

genomics↗

Over-expression of Hsp83 in grossly depleted hsrω lncRNA background causes synthetic lethality and l(2)gl phenocopy in Drosophila

We examined interactions between Hsp83 and hsr{omega} lncRNAs in hsr{omega}66 Hsp90GFP homozygotes, which almost completely lack hsr{omega} lncRNAs but over-express Hsp83. All +/+; hsr{omega}66 Hsp90GFP progeny died before third instar. Rare Sp/CyO; hsr{omega}66 Hsp90GFP reached third instar stage but phenocopied l(2)gl mutants, dying after prolonged larval life, becoming progressively bulbous and transparent with enlarged brain. Additionally, ventral ganglia were elongated. However, hsr{omega}66 Hsp90GFP/TM6B heterozygotes, carrying +/+ or Sp/CyO second chromosomes, developed normally. Total RNA sequencing (+/+, +/+; hsr{omega}66/hsr{omega}66, Sp/CyO; hsr{omega}66/hsr{omega}66, +/+; Hsp90GFP/Hsp90GFP, and Sp/CyO; hsr{omega}66 Hsp90GFP/hsr{omega}66 Hsp90GFP late third instar larvae) revealed similar effects on many genes in hsr{omega}66 and Hsp90GFP homozygotes. Besides additive effect on many of them, numerous additional genes were affected in Sp/CyO; hsr{omega}66 Hsp90GFP larvae, with l(2)gl and several genes regulating CNS being highly down-regulated in surviving Sp/CyO; hsr{omega}66 Hsp90GFP larvae, but not in hsr{omega}66 or Hsp90GFP single mutants. Hsp83 binds at these gene promoters. Several omega speckle associated hnRNPs too may bind with these genes and transcripts. Hsp83-hnRNP interactions are also known. Thus, elevated Hsp83 in altered hnRNP distribution and dynamics, following absence of hsr{omega} lncRNAs and omega speckles, background can severely perturb regulatory circuits with unexpected consequences, including down-regulation of tumor suppressor gene like l(2)gl.

developmental biology↗

Altered hsrω lncRNA levels in activated Ras background further enhance Ras activity in Drosophila eye and induces more R7 photoreceptors

We exploited the high Ras activity induced differentiation of supernumerary R7 cells in Drosophila eyes to examine if hsr{omega} lncRNAs influence active Ras signaling. Surprisingly, either down- or up-regulation of hsr{omega} lncRNAs in sev-GAL4>RasV12 expressing eye discs resulted in complete pupal lethality and substantially greater increase in R7 photoreceptor number at the expense of cone cells. Enhanced nuclear p-MAPK and presence of sev-GAL4 driven RasV12 bound RafRBDFLAG in cells not expressing the sev-GAL4 driver indicated non-cell autonomous spread of Ras signaling when hsr{omega} levels were co-altered. RNA-sequencing revealed that down-and up-regulation of hsr{omega} transcripts in sev-GAL4>RasV12 expressing eye discs elevated transcripts of positive or negative modulators, respectively, of Ras signaling so that either condition enhances it. Altered hsr{omega} transcript levels in sev-GAL4>RasV12 expressing discs also affected sn/sno/sca RNAs and some other RNA processing transcript levels. Post-transcriptional changes due to the disrupted intra-cellular dynamicity of omega speckle associated hnRNPs and other RNA-binding proteins that follow down- or up-regulation of hsr{omega} lncRNAs appear to be responsible for the further elevated Ras signaling. Cell autonomous and non-autonomous enhancement of Ras signaling by lncRNAs like hsr{omega} has implications for cell signaling during high Ras activity commonly associated with some cancers.\n\nHighlightsOur findings highlight roles of hsr{omega} lncRNAs in conditionally modulating the important Ras signaling pathway and provide evidence for cell non-autonomous Ras signaling in Drosophila eye discs.

cell biology↗