Biology subjects

Kysely, R.

Publications and source records attributed to Kysely, R..

3 recordsLinked to original sources

bioRxiv2025

Probing the zooarchaeological record across time and space for ancient pathogens

Zoonoses are among the greatest threats to human health, with many zoonotic pathogens believed to have emerged during prehistory. Palaeomicrobiological investigations of the zooarchaeological record hold potential to uncover the reservoirs, host ranges, and host adaptations of zoonotic pathogens but face challenges in identifying promising specimens and pathogen DNA preservation. We performed palaeopathological and genetic examinations of 346 skeletal elements from domesticated and wild animals collected from 34 Eurasian sites dating across the last six millennia. We identified 68 signatures of ancient (opportunistic) pathogens, including the important zoonotic pathogen Salmonella enterica, and found support that palaeopathological lesions provide guidance for specimen selection. For two pathogen species, Erysipelothrix rhusiopathiae and Streptococcus lutetiensis, we confirmed their ancient authenticity using phylogenetics, showcasing an approach to explore the relationship between ancient low-coverage genomes and their modern-day relatives. Our work presents a pathway to understanding prehistoric zoonotic diseases by integrating zooarchaeological, palaeopathological, and genetic data.

microbiology↗

bioRxiv2024

Trophic adaptation of large terrestrial omnivores to global change

Large omnivores at the top of food webs play a key role in ecosystems, as their ability to feed on multiple trophic levels stabilizes food-web dynamics and impacts ecosystem functioning. However, it is largely unexplored how large omnivores adapt their trophic interactions to altered resource availability under global change, particularly in terrestrial ecosystems. Here, we combine macroecological and paleoecological approaches and reveal that extant bears, the largest terrestrial omnivores, adapt their trophic position in food webs dynamically to net primary productivity and growing season length. Throughout their geographic ranges, extant bears occupy higher trophic positions in unproductive ecosystems with short growing seasons than in productive ecosystems with long growing seasons. Consistent with this geographic pattern, the trophic position of the brown bear sharply decreased at the transition from the Late Pleistocene to the Holocene, coinciding with an increase in net primary productivity and growing season length. These findings demonstrate that trophic interactions of omnivores are not static but change dynamically in response to environmental change. Our findings suggest that global change impacts on primary production and vegetation seasonality may trigger shifts in the functional role of omnivores, with consequences for food webs and ecosystem functions. Significance statementLarge omnivores play a key role in ecosystems, as they stabilize food-web dynamics and impact ecosystem functioning. However, how omnivores adapt their trophic interactions to changes in resource availability under global change remains unexplored. Combining macroecological and paleoecological approaches, we show that extant bears, the largest terrestrial omnivores, occupy lower trophic positions in food webs as net primary productivity and growing season length increase. This trophic adaptation is evident across the geographic ranges of all extant terrestrial bear species and for brown bears at the transition from the Late Pleistocene to the Holocene. Therefore, impacts of global change on primary production and vegetation seasonality may trigger shifts in the functional role of omnivores, with consequences for food webs and ecosystems. One sentence summaryGlobal changes in primary productivity and vegetation seasonality alter the functional role of large omnivores in terrestrial ecosystems.

ecology↗

bioRxiv2021

Palaeogenomic analysis of black rat (Rattus rattus) reveals multiple European introductions associated with human economic history

The distribution of the black rat (Rattus rattus) has been heavily influenced by its association with humans. The dispersal history of this non-native commensal rodent across Europe, however, remains poorly understood, and different introductions may have occurred during the Roman and medieval periods. Here, in order to reconstruct the population history of European black rats, we generated a de novo genome assembly of the black rat, 67 ancient black rat mitogenomes and 36 ancient nuclear genomes from sites spanning the 1st-17th centuries CE in Europe and North Africa. Analyses of mitochondrial DNA confirm that black rats were introduced into the Mediterranean and Europe from Southwest Asia. Genomic analyses of the ancient rats reveal a population turnover in temperate Europe between the 6th and 10th centuries CE, coincident with an archaeologically attested decline in the black rat population. The near disappearance and re-emergence of black rats in Europe may have been the result of the breakdown of the Roman Empire, the First Plague Pandemic, and/or post-Roman climatic cooling.

evolutionary biology↗