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Biology subjects

Kuwae, M.

Publications and source records attributed to Kuwae, M..

2 recordsLinked to original sources

Sedimentary DNA can reveal past pelagic copepod population dynamics

O_LICopepods play a key trophic role as secondary producers, transferring primary production to higher trophic levels such as fish. Copepod production contributes significantly to successful fish recruitment. Despite their importance, knowledge of copepod dynamics over several decades remains limited due to the lack of long-term data series with adequate sampling and analysis. However, an understanding of long-term copepod dynamics is urgently required to strive toward better management for sustainable aquatic ecosystems and fish recruitment. C_LIO_LISedimentary DNA (sedDNA) has been developing as a useful tool for reconstructing past plankton dynamics. This study evaluates whether sedDNA targeting the pelagic copepod, Eodiaptomus japonicus, in Lake Biwa (Japan) can be an effective tool for elucidating its past population dynamics. C_LIO_LIWe applied a quantitative polymerase chain reaction method targeting the mitochondrial cytochrome c oxidase subunit I gene on two sediment cores and compared the detected sedDNA concentrations with the unique long-term dataset of demographic traits, biomass, specific growth rate, production, subitaneous eggs, and resting eggs of E. japonicus. C_LIO_LIThe sedDNA concentration of E. japonicus recovered from sediment layers correlated significantly with in situ production, biomass, and production of immediately hatching eggs but not with resting eggs or specific growth rate. Our study provides evidence for the effective use of sedDNA as a tracking tool for assessing past copepod production dynamics. C_LI

ecology↗

Fish environmental DNA in lake sediment overcomes the gap of reconstructing past fauna in lake ecosystems

O_LIUnderwater sediments are a natural archive of biological information. Reconstruction of past fauna has been conducted for various taxonomic groups using morphological remains and DNA derived from these remains. However, information on past occurrences of fish species, the top predator of lake ecosystems, could have been reproduced only in exceptional environments, and past quantitative information on fish, particularly in lake ecosystems, has been a knowledge gap in reconstructing past fauna. Tracking the quantitative fluctuations of fish is essential for reconstructing multiple trophic levels of organisms in lake ecosystems. C_LIO_LITo acquire past quantitative fish information from lake sediments, we collected approximately 30 cm-length of underwater sediments in Lake Biwa. We extracted sedimentary environmental DNA (eDNA) and measured temporal fluctuations in the eDNA concentration of the native and fishery target species Plecoglossus altivelis and Gymnogobius isaza. For P. altivelis, we examined the possibility of tracking quantitative fluctuations by comparing sedimentary eDNA with recorded catch per unit effort (CPUE). C_LIO_LIThe chronology of the sediments allowed us to obtain information on sediments collected in Lake Biwa over the past 100 years. The deepest depths at which sedimentary eDNA was detected were 30 and 13 cm for P. altivelis and G. isaza from the surface, corresponding to approximately 100 and 30 years ago, respectively. In the comparison of sedimentary eDNA concentrations and biomass, we found a significant correlation between the CPUE of P. altivelis and its sedimentary eDNA concentration adjusted to compensate for DNA degradation. Sedimentary eDNA fluctuations were observed in P. altivelis, possibly reflecting the abundance fluctuation due to variations in the main food resources of zooplankton. C_LIO_LIOur findings provide essential pieces for the reconstruction of past fauna of lake ecosystems. The addition of quantitative information on fish species will reach a new phase, for instance, by investigating population shifts or biological interactions in the reconstruction of past fauna in lake ecosystems. C_LI

ecology↗