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Kumar, R.

Publications and source records attributed to Kumar, R..

20 records · Page 2Linked to original sources

Feature Engineering Coupled Machine Learning Algorithms For Epileptic Seizure Forecasting From Intracranial EEGs

Epilepsy is one of the major neurological disorders affecting nearly 1 percentage of the global population. The major blunt is born by under developed and developing countries due to expensive treatment of epileptic conditions. Further, the lack of proper forecasting methods for an occurrence of epileptic seizures in epileptic-drug resistant patients or patients not amenable for surgery affects their psychological behaviour and restricts their daily activities. The forecasting is usually performed by human experts that leave a wide gap for human-bias and human error. Therefore, in the current work, we have evaluated the efficiency of several machine learning algorithms to automatically identify the preictal patterns corresponding to epileptic seizures from intracranial EEG signals. The robustness of the machine learning algorithms were tested after the data set was pre-processed using carefully chosen feature engineering strategies viz. denoised Fourier transforms as well as cross-correlation across electrodes in time and frequency domain. Extensive experimentations were carried out to determine the best combination of feature engineering techniques and machine learning algorithms. The best combination of feature engineering techniques and machine learning algorithm resulted in 0.7685 AUC (Area under the Receiver Operating Characteristic curve) on the random test samples. The suggested approach was fairly good at prediction of epilepsy in random samples and therefore, it can be used in epileptic seizure forecasting in patients where medication/surgery is ineffective. Eventually, our strategy reveals a robust method for brain disorders forecasting from EEGs.

bioengineering

Genome-wide association study of asthma in individuals of African ancestry reveals novel asthma susceptibility loci

BACKGROUNDAsthma is a complex disease with striking disparities across racial and ethnic groups, which may be partly attributable to genetic factors. One of the main goals of the Consortium on Asthma among African-ancestry Populations in the Americas (CAAPA) is to discover genes conferring risk to asthma in populations of African descent.\n\nMETHODSWe performed a genome-wide meta-analysis of asthma across 11 CAAPA datasets (4,827 asthma cases and 5,397 controls), genotyped on the African Diaspora Power Chip (ADPC) and including existing GWAS array data. The genotype data were imputed up to a whole genome sequence reference panel from n=880 African ancestry individuals for a total of 61,904,576 SNPs. Statistical models appropriate to each study design were used to test for association, and results were combined using the weighted Z-score method. We also used admixture mapping as a complementary approach to identify loci involved in asthma pathogenesis in subjects of African ancestry.\n\nRESULTSSNPs rs787160 and rs17834780 on chromosome 2q22.3 were significantly associated with asthma (p=6.57 x 10-9 and 2.97 x 10-8, respectively). These SNPs lie in the intergenic region between the Rho GTPase Activating Protein 15 (ARHGAP15) and Glycosyltransferase Like Domain Containing 1 (GTDC1) genes. Four low frequency variants on chromosome 1q21.3, which may be involved in the \"atopic march\" and which are not polymorphic in Europeans, also showed evidence for association with asthma (1.18 x10-6 [≤] p [≤] 3.06 x10-6). SNP rs11264909 on chromosome 1q23.1, close to a region previously identified by the EVE asthma meta-analysis as having a putative African ancestry specific effect, only showed differences in counts in subjects homozygous for alleles of African ancestry. Admixture mapping also identified a significantly associated region on chromosome 6q23.2, which includes the Transcription Factor 21 (TCF21) gene, previously shown to be differentially expressed in bronchial tissues of asthmatics and non-asthmatics.\n\nCONCLUSIONSWe have identified a number of novel asthma association signals warranting further investigation.

bioinformatics