Biology subjects

Kucuk, E.

Publications and source records attributed to Kucuk, E..

4 recordsLinked to original sources

bioRxiv2026

Disrupting the Right Inferior Frontal Gyrus Increases Social Brain Activity During Emotion Recognition

Neuroimaging studies have identified a specialised social brain network that supports emotion recognition and social cognition. This network performs a range of functions that include facial expression recognition and inferring the mental states of others. Studies of neuropsychological patients report that damage to the right inferior frontal gyrus (IFG), the top-down control area in this network, impairs facial expression recognition. To investigate how transient disruption of the right IFG affects the wider social brain we combined transcranial magnetic stimulation (TMS) with functional magnetic resonance imaging (fMRI). Participants (n=20) were scanned across two sessions while performing a delayed match-to-sample emotion recognition task in which happy or fearful expressions were preceded by a congruent or incongruent word cue. Prior to each scan, thetaburst TMS was delivered over the right IFG or over the vertex control site (session order was balanced across participants). A group whole-brain analysis revealed that TMS to the IFG increased neural activity in multiple regions of the social brain network. These included the bilateral temporal pole, precuneus and medial prefrontal cortex (mPFC). This pattern of results shows that the disruption of top-down control mechanisms localised in the IFG alters the neural processing in remote nodes of the social brain network. Our findings are discussed within the wider context of how we recognise and understand the emotions of other people.

neuroscience↗

bioRxiv2022

Moving and static faces, bodies, objects and scenes are differentially represented across the three visual pathways

Models of human cortex propose the existence of neuroanatomical pathways specialised for different behavioural functions. These pathways include a ventral pathway for object recognition, a dorsal pathway for performing visually guided physical actions and a recently proposed third pathway for social perception. In the current study we tested the hypothesis that different categories of moving stimuli are differentially processed across the dorsal and third pathways according to their behavioural implications. Human participants (N=30) were scanned with functional magnetic resonance imaging (fMRI) while viewing moving and static stimuli from five categories (faces, bodies, scenes, objects, and scrambled objects). Whole brain group analyses showed that moving bodies and moving objects increased neural responses in bilateral V5/MT+ and intraparietal sulcus (IPS), parts of the dorsal pathway. In addition, moving faces and moving bodies increased neural responses in bilateral V5/MT+ and the right posterior superior temporal sulcus (rpSTS), parts of the third pathway. This pattern of results was also supported by a separate region of interest (ROI) analysis showing that moving stimuli produced more robust neural responses for all visual object categories, particularly in lateral and dorsal brain areas. Our results suggest that dynamic naturalistic stimuli from different categories are routed along specific visual pathways that process their unique behavioural implications.

neuroscience↗

bioRxiv2022

Measuring the response to visually presented faces in the human lateral prefrontal cortex

Neuroimaging studies have identified multiple face-selective areas. In the current study we compared the functional response of the face area in the lateral prefrontal cortex to that of other face-selective areas. In Experiment 1 participants (N=32) were scanned viewing videos containing faces, bodies, scenes, objects, and scrambled objects. We identified a face-selective area in the right inferior frontal gyrus (rIFG). In Experiment 2 participants (N=24) viewed the videos or static images. Results showed that the rIFG, posterior superior temporal sulcus (pSTS) and occipital face area (OFA) exhibited a greater response to moving than static faces. In Experiment 3 participants (N=18) viewed face videos presented in the contralateral and ipsilateral visual fields. Results showed that the face areas in the IFG and pSTS responded equally to faces in both visual fields, while the OFA and fusiform face area (FFA) showed a contralateral bias. These experiments suggest two conclusions; firstly, in all three experiments the face area in the IFG was not as reliably identified as face areas in the occipitotemporal cortex. Secondly, the similarity of the response patterns in the IFG and pSTS face areas suggests that the areas are functionally connected, a conclusion consistent with neuroanatomical and functional connectivity evidence.

neuroscience↗

bioRxiv2017

It’s okay to be green: Draft genome of the North American Bullfrog (Rana [Lithobates] catesbeiana)

Frogs play important ecological roles as sentinels, insect control and food sources. Several species are important model organisms for scientific research to study embryogenesis, development, immune function, and endocrine signaling. The globally-distributed Ranidae (true frogs) are the largest frog family, and have substantial evolutionary distance from the model laboratory Xenopus frog species. Consequently, the extensive Xenopus genomic resources are of limited utility for Ranids and related frog species. More widely applicable amphibian genomic data is urgently needed as more than two-thirds of known species are currently threatened or are undergoing population declines.\n\nHerein, we report on the first genome sequence of a Ranid species, an adult male North American bullfrog (Rana [Lithobates] catesbeiana). We assembled high-depth Illumina reads (66-fold coverage), into a 5.8 Gbp (NG50 = 57.7 kbp) draft genome using ABySS v1.9.0. The assembly was scaffolded with LINKS and RAILS using pseudo-long-reads from targeted denovo assembler Kollector and Illumina Synthetic Long-Reads, as well as reads from long fragment (MPET) libraries. We predicted over 22,000 protein-coding genes using the MAKER2 pipeline and identified the genomic loci of 6,227 candidate long noncoding RNAs (IncRNAs) from a composite reference bullfrog transcriptome. Mitochondrial sequence analysis supported Lithobates as a subgenus of Rana. RNA-Seq experiments identified ~6,000 thyroid hormone- responsive transcripts in the back skin of premetamorphic tadpoles; the majority of which regulate DNA/RNA processing. Moreover, 1/6th of differentially-expressed transcripts were putative lncRNAs. Our draft bullfrog genome will serve as a useful resource for the amphibian research community.

genomics↗