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Kowalewski, J.

Publications and source records attributed to Kowalewski, J..

2 recordsLinked to original sources

Machine Learning Based Modelling of Human and Insect Olfaction Screens Millions of compounds to Identify Pleasant Smelling Insect Repellents

The rational discovery of behaviorally active odorants is impeded by limited information on how the olfactory system generates percept or valence for a volatile chemical. In previous studies, we showed that chemical informatics could be used to predict ligands for a large repertoire of odorant receptors in Drosophila (Boyle et al., 2013). However, it remained difficult to predict behavioral valence of volatiles since the activities of a large ensembles of odor receptors encode odor information, and little is known about the complex information processing circuitry. This is a systems-level challenge well-suited for Machine-learning approaches which we have used to model olfaction in two organisms with completely unrelated olfactory receptor proteins: humans ([~]400 GPCRs) and insects ([~]100 ion-channels). We use chemical structure-based Machine Learning models for prediction of valence in insects and for 146 human odor characters. Using these predictive models, we evaluate a vast chemical space of >10 million compounds in silico. Validations of human and insect behaviors yield very high success rates. The discovery of desirable fragrances for humans that are highly repulsive to insects offers a powerful integrated approach to discover new insect repellents.

neuroscience↗

wTSA-CRAFT : an open-access web server for rapid analysis of thermal shift assay experiments

The automated data processing provided by the TSA-CRAFT tool enables now to reach high throughput speed analysis of thermal shift assays. While the software is powerful and freely available, it still requires installation process and command line efforts that could be discouraging. To simplify the procedure, we decided to make it available and easy to use by implementing it with a graphical interface via a web server, enabling a cross-platform usage from any web browsers. We developed a web server embedded version of the TSA-CRAFT tool, enabling a user-friendly graphical interface for formatting and submission of the input file and visualization of the selected thermal denaturation profiles. We describe a typical case study of buffer condition optimization of the biologically relevant APH(3)-IIb bacterial protein in a 96 deep-well thermal shift analysis screening. wTSA-CRAFT is freely accessible for non-commercial usage at https://bioserv.cbs.cnrs.fr/TSA_CRAFT.

bioinformatics↗