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Korngreen, A.

Publications and source records attributed to Korngreen, A..

8 recordsLinked to original sources

Neuronal excitability and parameter variability in the Hodgkin-Huxley model

Biophysically detailed neuron models are often built as a one-way pipeline in which voltage-clamp data are reduced to a single set of best-fit channel parameters, which are then combined into a deterministic spiking model. This practice discards experimentally observed variability and obscures the mechanisms by which robustness and degeneracy arise in excitable systems. Here, we reintroduce parameter variability into the Hodgkin-Huxley model and embed uncertainty and global sensitivity analysis into model construction. We digitized sodium and potassium rate constant data from the original Hodgkin and Huxley figures and used bootstrap resampling to estimate the variability of the voltage-dependent kinetic parameters. We then propagated these uncertainty estimates through a spatially extended squid axon cable model using large-scale Monte Carlo simulations. At the channel level, first-order Sobol sensitivity indices revealed that all kinetic parameters contribute to output variance in a strongly time-dependent manner, with distinct parameters controlling transient and steady-state behavior for potassium and sodium conductances. At the level of neuronal excitability, sampling hundreds of thousands of parameter sets produced a heterogeneous population of firing behaviors, including non-firing, phasic, regular, and spontaneous activity. Across stimulus amplitudes, the dominant firing mode was a single spike at stimulus onset. At the same time, the regularly firing subpopulation exhibited a broad distribution of firing rates, with a mean that matched the classic Hodgkin-Huxley prediction. In the phasic subpopulation, action potential propagation and conduction velocity varied widely yet remained consistent with experimental ranges. Finally, global sensitivity analysis during spiking shows uniformly small first-order indices but large total-order indices, indicating that excitability is primarily governed by strong interactions among parameters rather than by any single conductance or kinetic parameter. These results support a population-based view of conductance-based modeling in which biologically relevant behavior emerges from structured regions of parameter space. Author summaryNeurons are often modelled by first fitting ion-channel data to a few parameters, then integrating them into a single-neuron model. This typical method masks the fact that actual experiments show variability and that many different parameter sets can yield similar electrical behavior. In this research, we explored what happens when we keep rather than average out that variability. We revisited Hodgkin and Huxleys classic squid giant axon studies and derived ranges for sodium and potassium channel parameters by resampling digitized points from the original Hodgkin-Huxley figures using bootstrap resampling. We then ran simulations of hundreds of thousands of squid axon models, each with a unique, experimentally grounded parameter set, and analyzed the collective results. This showed that the most common response was a single action potential rather than repetitive firing, aligning with the axons role in the rapid escape response. Additionally, we discovered that no single parameter alone controls spiking; rather, it depends on interactions among multiple parameters. Our findings advocate a practical change in biophysical modeling: instead of hunting for a single best-fit model, researchers should estimate parameter uncertainty directly from data, create large ensembles that sample this uncertainty, and perform sensitivity analyses on these ensembles before choosing any model for further study.

neuroscience↗

Sensitivity analysis of voltage-gated ion channel models.

Markov models are widely used to describe the gating kinetics of voltage-gated ion channels, but increasing model complexity can introduce parameters that are difficult to constrain from macroscopic measurements. In this study, I used global variance-based Sobol sensitivity analysis to examine how model topology, stimulation protocol, and parameter uncertainty shape the accessibility of kinetic parameters in voltage-gated ion channel models. I analyzed progressively more complex Markov schemes, beginning with a two-state closed-open model, extending to a three-state linear closed-closed-open model, a cyclic three-state model with a direct closed-open transition, and a four-state closed-closed-open-inactivated model. Sensitivity was quantified for the open probability (P) under voltage-step and sinusoidal protocols. In linear models, parameter influence was concentrated in transitions directly connected to the open state, whereas distal closed-closed transitions contributed little to output variance. This weak influence was not rescued by higher-order interaction effects. Multi-frequency sinusoidal stimulation (20-200 Hz) preserved the same sensitivity hierarchy observed under step protocols, indicating that dynamic stimulation does not overcome the structural limitations of serial topologies. In contrast, introducing a cyclic pathway fundamentally redistributed sensitivity, showing that distal-parameter weakness is a consequence of serial arrangement rather than a universal property of Markov gating. Adding inactivation shifted dominant variance control to the open-inactivated transition during sustained depolarization, yet distal closed-closed transitions remained weak. Finally, constraining variability at the dominant activation edge shifted variance upstream, demonstrating that low Sobol indices reflect the relative flexibility of competing bottlenecks within a given ensemble rather than the intrinsic irrelevance of a transition. Together, these results define topology-dependent limits on parameter accessibility in Markov models of voltage-gated ion channels and provide practical guidance for selecting model complexity, designing informative protocols, and favoring cyclic over extended linear topologies when constructing robust channel models.

neuroscience↗

Cold and warmth intensify pain-linked sodium channel gating effects and persistent currents

Voltage-gated sodium channels (Nav) are key players in excitable tissues with the capability to generate and propagate action potentials. Mutations in the genes encoding Navs can lead to severe inherited diseases, and some of these so-called channelopathies are showing temperature sensitive phenotypes, for example paramyotonia congenita, Brugada-syndrome, febrile seizure syndromes and inherited pain syndromes like erythromelalgia (IEM) and paroxysmal extreme pain disorder (PEPD). Nevertheless, most investigations of mutation-induced gating effects were conducted at room temperature and thus the role of cooling or warming in channelopathies remains poorly understood. Here, we investigated the temperature sensitivity of four Nav subtypes: Nav1.3, Nav1.5, Nav1.6, and Nav1.7 and two mutations in Nav1.7 causing IEM (Nav1.7/L823R) and PEPD (Nav1.7/I1461T), using an automated patch clamp system. Our experiments at 15 {degrees}C, 25 {degrees}C and 35 {degrees}C revealed a shift of the voltage dependence of activation to more hyperpolarized potentials with increasing temperature for all investigated subtypes. Nav1.3 exhibited strongly slowed inactivation kinetics compared to the other subtypes that resulted in enhanced persistent current especially at 15 {degrees}C, indicating a possible role in cold induced hyperexcitability. Impaired fast inactivation of Nav1.7/I1461T was significantly enhanced by cooling temperature to 15 {degrees}C. The subtype specific modulation as well as the intensified mutation induced gating changes stress the importance to consider temperature as regulator for channel gating and its impact on cellular excitability as well as disease phenotypes. SummaryActivation of the sodium channel subtypes Nav1.3, Nav1.5, Nav1.6, and Nav1.7 and two pain linked mutations is alleviated by warmth. Cooler temperatures, on the other hand, strongly enhance persistent currents of Nav1.3. The impaired fast inactivation of the pain-linked Nav1.7/I1461T mutation is further impaired by cooling, mimicking clinical findings.

physiology↗

Kinetic and thermodynamic modeling of a voltage-gated sodium channel

Like all biological and chemical reactions, ion channel kinetics are highly sensitive to changes in temperature. Therefore, it is prudent to investigate channel dynamics at physiological temperatures. However, most ion channel investigations are performed at room temperature due to practical considerations, such as recording stability and technical limitations. This problem is especially severe for the fast voltage-gated sodium channel, whose activation kinetics are faster than the time constant of the standard patch-clamp amplifier at physiological temperatures. Thus, biologically detailed simulations of the action potential generation evenly scale the kinetic models of voltage-gated channels acquired at room temperature. To quantitatively study voltage-gated sodium channels temperature sensitivity, we recorded sodium currents from nucleated patches extracted from the rats layer five neocortical pyramidal neurons at several temperatures from 13.5 to 30oC. We use these recordings to model the kinetics of the voltage-gated sodium channel as a function of temperature. We show that the temperature dependence of activation differs from that of inactivation. Furthermore, we show that the sustained current has a different temperature dependence than the fast current. Our kinetic and thermodynamic analysis of the current provided a numerical model spanning the entire temperature range. This model reproduced vital features of channel activation and inactivation. Furthermore, the model also reproduced action potential dependence on temperature. Thus, we provide an essential building block for the generation of biologically detailed models of cortical neurons.

neuroscience↗

Endocannabinoids and dopamine balance basal ganglia output

The entopeduncular nucleus is one of the basal ganglias output nuclei, thereby controlling basal ganglia information processing. Entopeduncular nucleus neurons integrate GABAergic inputs from the striatum and the globus pallidus and glutamatergic inputs from the subthalamic nucleus. We show that endocannabinoids and dopamine interact to modulate the long-term plasticity of all the primary afferents to the entopeduncular nucleus. Our results suggest that dopamine-endocannabinoids interplay determines the balance of the direct or indirect dominance of entopeduncular nucleus output. Furthermore, we demonstrate that, despite the lack of axon collaterals, information is transferred between neighboring neurons in the entopeduncular nucleus via endocannabinoids diffusion. These results transform the prevailing view of the entopeduncular nucleus as a feedforward "relay" nucleus to an intricate control unit, which may play a vital role in the process of action selection.

neuroscience↗

NeuroGPU, software for NEURON modeling in GPU-based hardware

The membrane potential of individual neurons depends on a large number of interacting biophysical processes operating on spatial-temporal scales spanning several orders of magnitude. The multi-scale nature of these processes dictates that accurate prediction of membrane potentials in specific neurons requires utilization of detailed simulations. Unfortunately, constraining parameters within biologically detailed neuron models can be difficult, leading to poor model fits. This obstacle can be overcome partially by numerical optimization or detailed exploration of parameter space. However, these processes, which currently rely on central processing unit (CPU) computation, often incur exponential increases in computing time for marginal improvements in model behavior. As a result, model quality is often compromised to accommodate compute resources. Here, we present a simulation environment, NeuroGPU, that takes advantage of the inherent parallelized structure of graphics processing unit (GPU) to accelerate neuronal simulation. NeuroGPU can simulate most of biologically detailed models 800x faster than traditional simulators when using multiple GPU cores, and even 10-200 times faster when implemented on relatively inexpensive GPU systems. We demonstrate the power of NeuoGPU through large-scale parameter exploration to reveal the response landscape of a neuron. Finally, we accelerate numerical optimization of biophysically detailed neuron models to achieve highly accurate fitting of models to simulation and experimental data. Thus, NeuroGPU enables the rapid simulation of multi-compartment, biophysically detailed neuron models on commonly used computing systems accessible by many scientists.

neuroscience↗

Information transmission in a constitutively active GABAergic synapse

Short-term depression is a low pass filter of synaptic information that reduces and flattens synaptic information transfer at high presynaptic firing frequencies. This view questions the relevance of spontaneous high firing rates in some networks. In the indirect pathway of the basal ganglia, spontaneously active neurons in the globus pallidus (GP) form depressing inhibitory synapses in the basal ganglia output nuclei. Using numerical modeling and whole-cell recordings from single entopeduncular nucleus (EP) neurons in rat brain slices we investigated the contribution of the different firing rates of GP neurons to information transmission in the indirect pathway. Wholecell recordings showed significant variability in steady-state depression which decreased as stimulation frequency increased. Modeling predicted that this variability would translate into different postsynaptic noise levels during constitutive presynaptic activity. Our simulations further predicted that individual GP-EP synapses mediate gain control. However, when we consider integration of multiple inputs, the large range of GP firing rates would enable different modes of information transmission in which the magnitude and temporal features of postsynaptic modulation would change as a function of present and past firing rates of GP neurons. Finally, we predict that changes in dopamine levels can shift the action of GP neurons from rate coding to gain modulation. Our results thus demonstrate how short-term synaptic depression shapes information transmission in the basal ganglia in particular and via GABAergic synapses in general.\n\nSignificant statementSynapses displaying short-term depression are low-pass filters of synaptic input. Consequently, when presynaptic firing is high, little information passes to the postsynaptic neuron. However, many neurons fire at relatively high frequencies all the time. Are their synapses constantly silenced by depression? We tested this apparent contradiction in the indirect pathway of the basal ganglia, where neurons from the globus pallidus (GP) form constitutively active depressing synapses on basal ganglia output. We hypothesized that the different rates of ongoing activity underlie different modes of action for GP neurons. We show that the synaptic and structural properties of the indirect pathway map GP baseline frequencies to different postsynaptic signals, thus demonstrating how short-term synaptic depression shapes information transmission in the basal ganglia.

neuroscience↗

Voltage-gated sodium channels in neocortical pyramidal neurons display Cole-Moore activation kinetics

Exploring the properties of action potentials is a crucial step towards a better understanding of the computational properties of single neurons and neural networks. The voltage-gated sodium channel is a key player in action potential generation. A comprehensive grasp of the gating mechanism of this channel can shed light on the biophysics of action potential generation. Most models of voltage-gated sodium channels assume it obeys a concerted Hodgkin and Huxley kinetic gating scheme. Here we performed high resolution voltage-clamp experiments from nucleated patches extracted from the soma of layer 5 (L5) cortical pyramidal neurons in rat brain slices. We show that the gating mechanism does not follow traditional Hodgkin and Huxley kinetics and that much of the channel voltage-dependence is probably due to rapid closed-closed transitions that lead to substantial onset latency reminiscent of the Cole-Moore effect observed in voltage-gated potassium conductances. This may have key implications for the role of sodium channels in synaptic integration and action potential generation.

neuroscience↗