Biology subjects

Kondabolu, K.

Publications and source records attributed to Kondabolu, K..

10 recordsLinked to original sources

bioRxiv2025

AAV2-mediated intravitreal delivery of exon-specific U1 snRNA rescues optic neuropathy in a mouse model of familial dysautonomia.

Familial dysautonomia (FD) is a rare autosomal recessive neurodegenerative disorder caused by a splicing mutation in the ELP1 gene. It predominantly affects the sensory and autonomic nervous systems, with progressive vision loss due to optic neuropathy being a universal and debilitating symptom. Retinal pathology in FD involves progressive thinning of the retinal nerve fiber layer (RNFL), resulting from the degeneration of retinal ganglion cells (RGCs). Notably, FD-associated vision loss has a postnatal onset, offering a critical window for therapeutic intervention before severe visual impairment develops in adolescence. Currently, no approved treatments exist to prevent or reverse vision loss in FD. In this study, we present a novel RNA-based therapeutic approach targeting ELP1 pre-mRNA splicing in the retina. We engineered exon-specific U1 small nuclear RNAs (ExSpeU1s) to enhance inclusion of exon 20 in the mutant ELP1 transcripts in the retina, thereby restoring full-length ELP1 expression. Delivery of ExSpeU1 via adeno-associated virus serotype 2 (AAV2) to the retina improved ELP1 splicing, rescued RGC loss, and visual function in an FD mouse model. These findings highlight ExSpeU1-mediated splicing correction as a promising therapeutic approach for treating optic neuropathy in FD, offering potential to preserve vision and improve quality of life for patients.

molecular biology↗

bioRxiv2025

High frequency electrical stimulation entrains fast spiking interneurons and bidirectionally modulates information processing

BackgroundClinical intracranial electrical stimulation often deploys trains of high frequency pulses. While brief bursts of stimulation are known to heterogeneously modulate neuronal spiking, it is unclear how trains of high frequency pulses influence neural dynamics. ObjectiveAs fast spiking interneurons (FSIs) can support rapid firing, we seek to determine how high frequency stimulation modulates FSIs. MethodsWe characterized the real-time effect of one-second-long local stimulation at 40 versus 140 Hz on parvalbumin positive interneurons, known as FSIs, in motor and visual cortices in awake mice using near kilohertz voltage imaging, free of electrical stimulation artifact. ResultsStimulation at 140 Hz, like 40 Hz, heterogeneously modulates individual FSIs membrane voltage in both cortices, leading to complex temporal dynamics. FSIs in both cortices are robustly entrained by 40 Hz stimulation, even though 40 Hz led to prominent membrane hyperpolarization in visual cortex but not motor cortex. Intriguingly, visual cortical FSIs, but not motor cortical ones, were reliably entrained by 140 Hz stimulation. Finally, while stimulation consistently reduced the response amplitude of visual cortical FSIs to visual flickers, response temporal precision is bidirectionally modulated. ConclusionHigh frequency electrical stimulation mediates brain-region specific entrainment of FSIs, and bidirectionally modulates FSI temporal processing of synaptic inputs. Thus, high frequency stimulation can differentially engage inhibitory neurons in different brain regions to modulate network information processing. HighlightsO_LIEvoked membrane potential (Vm) responses are frequency and brain region specific C_LIO_LI140 Hz stimulation entrains the Vm of visual, but not motor, cortical FSIs C_LIO_LI140 Hz, but not 40 Hz, is effective at reducing Vm amplitude to visual flickers C_LIO_LIStimulation bidirectionally modulates Vm response timing to visual inputs C_LIO_LIVisual cortical FSIs are suppressed by 40 Hz stimulation, unlike other conditions C_LI

neuroscience↗

bioRxiv2024

Engineered CRISPR-Base Editors as a Permanent Treatment for Familial Dysautonomia

Familial dysautonomia (FD) is a fatal autosomal recessive sensory and autonomic neuropathy. FD is caused by a T-to-C point mutation in intron 20 of the Elongator acetyltransferase complex subunit 1 (ELP1) gene, which results in tissue-specific skipping of exon 20 to cause a premature termination codon and thus redues ELP1 protein levels. Here, we developed a CRISPR-Cas-based cytosine base editing strategy to permanently correct the disease-causing mutation and restore canonical mRNA splicing. Through systematic engineering of base editors and guide RNAs, we identified an optimal editor configuration capable of achieving up to 70% on-target correction in human cells and that restored ELP1 exon 20 inclusion. To enable in vivo delivery, a dual adeno-associated virus (AAV) intein-split base editor was delivered via intravenous injections in a humanized FD mouse mode, resulting in genetic correction and significantly increased ELP1 exon 20 inclusion in the brain and other tissues. In FD patient-derived iPSC-sympathetic neurons, we observed [~]10% correction efficiency but rescued disease-associated neuronal hyperactivity, demonstrating that partial correction can restore functional phenotypes. Genome-wide analyses revealed minimal off-target editing across multiple human cell types, supporting the specificity of this approach. Together, these findings establish a precise and permanent genome editing strategy for FD and supports the development of a one-time disease-modifying therapy for FD and highlights the therapeutic potential of base editing for splicing disorders.

bioengineering↗

bioRxiv2024

Photothrombosis induced cortical stroke produces electrographic epileptic biomarkers in mice

ObjectiveInterictal epileptiform spikes, high-frequency ripple oscillations, and their co-occurrence (spike ripples) in human scalp or intracranial voltage recordings are well-established epileptic biomarkers. While clinically significant, the neural mechanisms generating these electrographic biomarkers remain unclear. To reduce this knowledge gap, we introduce a novel photothrombotic stroke model in mice that reproduces focal interictal electrographic biomarkers observed in human epilepsy. MethodsWe induced a stroke in the motor cortex of C57BL/6 mice unilaterally (N=7) using a photothrombotic procedure previously established in rats. We then implanted intracranial electrodes (2 ipsilateral and 2 contralateral) and obtained intermittent local field potential (LFP) recordings over several weeks in awake, behaving mice. We evaluated the LFP for focal slowing and epileptic biomarkers - spikes, ripples, and spike ripples - using both automated and semi-automated procedures. ResultsDelta power (1-4 Hz) was higher in the stroke hemisphere than the non-stroke hemisphere in all mice (p<0.001). Automated detection procedures indicated that compared to the non-stroke hemisphere, the stroke hemisphere had an increased spike ripple (p=0.006) and spike rates (p=0.039), but no change in ripple rate (p=0.98). Expert validation confirmed the observation of elevated spike ripple rates (p=0.008) and a trend of elevated spike rate (p=0.055) in the stroke hemisphere. Interestingly, the validated ripple rate in the stroke hemisphere was higher than the non-stroke hemisphere (p=0.031), highlighting the difficulty of automatically detecting ripples. Finally, using optimal performance thresholds, automatically detected spike ripples classified the stroke hemisphere with the best accuracy (sensitivity 0.94, specificity 0.94). SignificanceCortical photothrombosis-induced stroke in commonly used C57BL/6 mice produces electrographic biomarkers as observed in human epilepsy. This model represents a new translational cortical epilepsy model with a defined irritative zone, which can be broadly applied in transgenic mice for cell type specific analysis of the cellular and circuit mechanisms of pathologic interictal activity. Key PointsO_LICortical photothrombosis in mice produces stroke with characteristic intermittent focal delta slowing. C_LIO_LICortical photothrombosis stroke in mice produces the epileptic biomarkers spikes, ripples, and spike ripples. C_LIO_LIAll biomarkers share morphological features with the corresponding human correlate. C_LIO_LISpike ripples better lateralize to the lesional cortex than spikes or ripples. C_LIO_LIThis cortical model can be applied in transgenic mice for mechanistic studies. C_LI

neuroscience↗

bioRxiv2023

Large-scale deep tissue voltage imaging with targeted illumination confocal microscopy

Voltage imaging with cellular specificity has been made possible by the tremendous advances in genetically encoded voltage indicators (GEVIs). However, the kilohertz rates required for voltage imaging lead to weak signals. Moreover, out-of-focus fluorescence and tissue scattering produce background that both undermines signal-to-noise ratio (SNR) and induces crosstalk between cells, making reliable in vivo imaging in densely labeled tissue highly challenging. We describe a microscope that combines the distinct advantages of targeted illumination and confocal gating, while also maximizing signal detection efficiency. The resulting benefits in SNR and crosstalk reduction are quantified experimentally and theoretically. Our microscope provides a versatile solution for enabling high-fidelity in vivo voltage imaging at large scales and penetration depths, which we demonstrate across a wide range of imaging conditions and different GEVI classes.

neuroscience↗

bioRxiv2022

Single and complex spikes relay distinct frequency-dependent circuit information in the hippocampus

Hippocampal neurons generate either single spikes or stereotyped bursts of spikes known as complex spikes. Although single and complex spikes co-occur in the same neuron, their contribution to information processing remains unclear. We analyzed hippocampal CA1 neurons in awake mice and in behaving rats, combining cellular membrane voltage imaging with optogenetics and extracellular recordings. We found that network-driven subthreshold membrane rhythms in the theta versus gamma frequencies preferably entrained complex versus single spikes in individual neurons. Optogenetic membrane perturbation revealed a causal link between subthreshold theta and gamma power and the initiation of complex versus single spikes. Further, single and complex spikes exhibited different place field properties and frequency-dependent coding during spatial navigation. Thus, individual hippocampal neurons do not integrate theta and gamma rhythms into a combined spike timing code, but instead, transmit frequency-specific information as distinct output modes of single versus complex spikes during spatial cognition.

neuroscience↗

bioRxiv2022

Deep brain stimulation creates information lesion through membrane depolarization

Deep brain stimulation (DBS) is a promising neuromodulation therapy that alters neural activity via intracranial electrical stimulation. However, the neurophysiological mechanisms of DBS remain largely unknown, because of the difficulty of obtaining cellular resolution recordings without electrical interference. Here, we performed high-speed membrane voltage fluorescence imaging of individual hippocampal CA1 neurons during DBS in awake mice. We discovered that DBS, delivered at either 40Hz or 140Hz, reliably depolarizes somatic membrane potentials. Further, DBS enhanced spike rates and paced membrane voltage and spike timing at the stimulation frequency, though more prominent at 40Hz than 140Hz. To determine how DBS induced membrane voltage change impacts neurons ability to process inputs, we optogenetically evoked membrane depolarization. We found that neurons become unreliable in responding to optogenetic inputs during DBS, particularly during 140Hz DBS. These results demonstrate that DBS produces powerful membrane depolarization that interferes with neurons ability to process inputs, creating information lesion.

neuroscience↗

bioRxiv2022

Selective inhibition of goal-directed actions in the mesencephalic locomotor region

Dopamine enables purposive behavior and adjusts vigor as a function of the relative value of actions. In Parkinsons disease, dopamine neurons die and give rise to a series of motor and cognitive changes that interfere with the expression of volitional actions. Here we report a novel inhibitory input to dopamine neurons originated in the mesencephalic locomotor region that selectively blocks purposive behavior. GABAergic neurons of the pedunculopontine nucleus (PPN) synapse onto dopamine neurons of the substantia nigra and decrease dopamine release in the dorsal striatum. Activation of PPN neurons abolished exploratory locomotion and goal-directed actions while preserved other motor behaviors; furthermore, PPN caused a decrease in movement vigor and interrupted motor sequences presumably by modulating the immediate value of the learned action. Our results reveal an inhibitory mechanism in the midbrain that rapidly and reversibly adjusts the intrinsic value of ongoing actions.

neuroscience↗

bioRxiv2020

A selective projection from the subthalamic nucleus to parvalbumin-expressing interneurons of the striatum

The striatum and subthalamic nucleus (STN) are considered to be the primary input nuclei of the basal ganglia. Projection neurons of both striatum and STN can extensively interact with other basal ganglia nuclei, and there is growing anatomical evidence of direct axonal connections from the STN to striatum. There remains, however, a pressing need to elucidate the organization and impact of these subthalamostriatal projections in the context of the diverse cell types constituting the striatum. To address this, we carried out monosynaptic retrograde tracing from genetically-defined populations of dorsal striatal neurons in adult male and female mice, quantifying the connectivity from STN neurons to spiny projection neurons, GABAergic interneurons, and cholinergic interneurons. In parallel, we used a combination of ex vivo electrophysiology and optogenetics to characterize the responses of a complementary range of dorsal striatal neuron types to activation of STN axons. Our tracing studies showed that the connectivity from STN neurons to striatal parvalbumin-expressing interneurons is significantly higher (~ four-to eight-fold) than that from STN to any of the four other striatal cell types examined. In agreement, our recording experiments showed that parvalbumin-expressing interneurons, but not the other cell types tested, commonly exhibited robust monosynaptic excitatory responses to subthalamostriatal inputs. Taken together, our data collectively demonstrate that the subthalamostriatal projection is highly selective for target cell type. We conclude that glutamatergic STN neurons are positioned to directly and powerfully influence striatal activity dynamics by virtue of their enriched innervation of GABAergic parvalbumin-expressing interneurons.

neuroscience↗

bioRxiv2018

Cholinergic Midbrain Afferents Modulate Striatal Circuits and Shape Encoding of Action Control

Assimilation of novel strategies into a consolidated action repertoire is a crucial function for behavioral adaptation and cognitive flexibility. Acetylcholine in the striatum plays a pivotal role in such adaptation and its release has been causally associated with the activity of cholinergic interneurons. Here we show that the midbrain, a previously unknown source of acetylcholine in the striatum, is a major contributor to cholinergic transmission in the striatal complex. Neurons of the pedunculopontine and laterodorsal tegmental nuclei synapse with striatal cholinergic interneurons and give rise to excitatory responses that, in turn, mediate inhibition of spiny projection neurons. Inhibition of acetylcholine release from midbrain terminals in the striatum impairs action shifting and mimics the effects observed following inhibition of acetylcholine release from striatal cholinergic interneurons. These results suggest the existence of two hierarchically-organized modes of cholinergic transmission in the striatum where cholinergic interneurons are modulated by cholinergic neurons of the midbrain.

neuroscience↗