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Koch, K. E.

Publications and source records attributed to Koch, K. E..

3 recordsLinked to original sources

Strigolactones are involved in enhancing iron uptake in maize

Strigolactones are plant hormones with roles in a wide range of signaling and developmental processes. A yellow-striped maize mutant, (interveinal yellow) ivy, was determined to have low iron in tissues under normal growth conditions. The gene underlying the ivy mutation was mapped and identified as ZmCCD8, a key enzyme in the biosynthesis of strigolactones. Under iron-replete conditions, comparison of the transcriptomes of wild-type plants and maize ccd8 mutants revealed suppression of several iron-regulated genes in ccd8. These genes are normally up-regulated during iron deficiency and include the key iron-regulated transcription factor IRO2 as well as genes involved in the biosynthesis of iron chelators and transporters. External supply of synthetic strigolactone to ivy mutants alleviated chlorosis and returned iron-regulated gene expression to wild-type levels. In iron limited conditions, iron-regulated gene expression in ccd8 mutants responded normally, indicating that strigolactones are not required for response to externally imposed iron deficiency. However, they are required for basal expression of iron-regulated genes when adequate iron is available, highlighting a distinction between iron homeostasis during normal growth, and the iron deficiency response triggered by the lack of external available iron. The connection between strigolactones and iron homeostasis is not limited to maize, as Arabidopsis ccd8 mutants also show strong chlorosis when grown on medium with moderate levels of iron. This previously unappreciated role may have implications for the use of strigolactones in agricultural contexts.

plant biology↗

AP-2γ is Required for Maintenance of Pluripotent Mammary Stem Cells

Mammary gland ductal morphogenesis depends on the differentiation of mammary stem cells (MaSCs) into basal and luminal lineages. The AP-2{gamma} transcription factor, encoded by Tfap2c, has a central role in mammary gland development but its effect in mammary lineages and specifically MaSCs is largely unknown. Herein, we utilized an inducible, conditional knockout of Tfap2c to elucidate the role of AP-2{gamma} in maintenance and differentiation of MaSCs. Loss of AP-2{gamma} in the basal epithelium profoundly altered the transcriptomes and decreased the number of cells within several clusters of mammary epithelial cells, including adult MaSCs and luminal progenitors. AP-2{gamma} regulated the expression of genes known to be required for mammary development including C/EBP{beta}, I{kappa}B, and Rspo1. As a result, AP-2{gamma}-deficient mice exhibited repressed mammary gland ductal outgrowth and inhibition of regenerative capacity. The findings demonstrate that AP-2{gamma} is required for maintenance of pluripotent MaSCs and their ability to develop mammary gland structures. HighlightsO_LIAP-2{gamma}-deficient mice exhibited repressed ductal outgrowth and regenerative capacity C_LIO_LILoss of AP-2{gamma} reduced the number of mammary stem and luminal progenitor cells C_LIO_LIAP-2{gamma} target genes, including C/EBP{beta}, I{kappa}B, and Rspo1, regulate mammary development C_LIO_LIAP-2{gamma} is required for maintenance of pluripotent mammary stem cells C_LI eTOC blurbGu, Cho and colleagues utilized a conditional knockout of Tfap2c to examine transcriptional effects of AP-2{gamma} on mammary stem cells. Single cell analysis demonstrated that AP-2{gamma}-deficient mice have decreased numbers of mammary stem cells and alteration of genes required for mammary development including C/EBP{beta}, I{kappa}B, and Rspo1. They demonstrate that AP-2{gamma} is necessary for maintenance of pluripotent mammary stem cells.

developmental biology↗

Structure and origin of the White Cap locus and its role in evolution of grain color in maize

Selection for yellow and white grain types has been central to post-domestication improvement of maize. While genetic control of carotenoid biosynthesis in endosperm is attributed primarily to the Yellow1 (Y1) phytoene synthase gene, less is known about the role of the dominant white endosperm factor White Cap (Wc). We show that the Wc locus contains multiple, tandem copies of a Carotenoid cleavage dioxygenase 1 (Ccd1) gene that encodes a carotenoid-degrading enzyme. A survey of 111 maize inbreds and landraces, together with 21 teosinte accessions reveals that Wc is exclusive to maize, where it is prevalent in white-grain (y1) varieties. Moreover, Ccd1 copy number varies extensively among Wc alleles (from 1 to 23 copies), and confers a proportional range of Ccd1 expression in diverse organs. We propose that this dynamic source of quantitative variation in Ccd1 expression was created in maize shortly after domestication by a two-step, Tam3L transposon-mediated process. First, a chromosome segment containing Ccd1 and several nearby genes duplicated at a position 1.9 Mb proximal to the progenitor Ccd1r locus on chromosome 9. Second, a subsequent interaction of Tam3L transposons at the new locus created a 28-kb tandem duplication, setting up expansion of Ccd1 copy number by unequal crossing over. In this way, transposon-mediated variation in copy number at the Wc locus created phenotypic variation that provided a foundation for breeding and selection of white grain color in maize.

genetics↗