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Biology subjects

Knouse, K. A.

Publications and source records attributed to Knouse, K. A..

3 recordsLinked to original sources

Albumin integrates liver functional status to initiate regeneration

How an organism detects organ injury to initiate regeneration remains one of the central unresolved questions in regenerative biology. The liver is the only solid organ in mammals capable of complete regeneration, a process initiated by hepatocyte growth factor (Hgf) upregulation, yet the mechanism linking liver injury to Hgf induction has been unknown. Here we identify an albumin-based sensing mechanism that continuously reports the livers functional status to hepatic stellate cells to gate the regenerative program. Using single-molecule RNA FISH, parabiosis, and an ex vivo plasma assay, we show that stellate cells are the predominant source of Hgf and that a circulating, protein-dependent signal suppresses Hgf expression when the liver is functional. Biochemical fractionation, immunodepletion, and albumin knockout mice together demonstrate that this suppressive signal is a molecule carried by albumin rather than albumin itself. Untargeted metabolomics identified retinol as the albumin-associated suppressive molecule, which we confirm is sufficient to restore Hgf suppression in injured liver plasma. Conversely, long-chain fatty acids that rise after hepatectomy, specifically palmitate and linoleate, which compete for the same albumin binding site, are sufficient to derepress Hgf in healthy plasma. These data support a dual-input model in which albumin functions as an AND gate, integrating retinol loss and fatty acid gain as coincident indicators of liver injury before permitting Hgf derepression. Consistent with this model, acute in vivo knockdown of albumin is sufficient to derepress Hgf in stellate cells and drive liver overgrowth. These findings establish albumin as an active integrator of physiological signals that governs tissue-scale regenerative decisions and reveal that the liver is constitutively poised to regenerate, gatekept by signals that directly reflect its own functional status.

physiology↗

A genome-wide screen in the mouse liver reveals sex-specific and cell non-autonomous regulation of cell fitness

A complete understanding of the genetic determinants underlying mammalian physiology and disease is limited by the availability of tools for high-throughput genetic dissection in the living organism. Genome-wide screening using CRISPR-Cas9 has emerged as a powerful method for uncovering the genetic regulation of cellular processes, but the need to stably deliver single guide RNAs to millions of cells has largely restricted its implementation to ex vivo systems. There thus remains a pressing need for accessible high-throughput functional genomics in a living organism. Here, we establish genome-wide enrichment and depletion screening in the liver of a single mouse and use this approach to uncover the complete regulation of cellular fitness in a living organism. We uncover regulation of cell fitness not previously identified in cell culture screens, underscoring the power of bringing high-throughput functional genomics into the organism. The approach we developed is accessible, robust, scalable, and adaptable to diverse phenotypes and CRISPR applications. We have hereby established a foundation for high-throughput functional genomics in a living mammal, enabling unprecedented insight into physiology and disease.

genomics↗

Quiescent cells actively replenish CENP-A nucleosomes to maintain centromere identity and proliferative potential

Centromeres provide a robust model for epigenetic inheritance as they are specified by sequence-independent mechanisms involving the histone H3-variant CENP-A. Prevailing models indicate that the high intrinsic stability of CENP-A nucleosomes maintains centromere identity indefinitely. Here, we demonstrate that CENP-A is not stable at centromeres, but is instead gradually and continuously incorporated in quiescent cells including G0-arrested tissue culture cells and prophase I-arrested oocytes. Quiescent CENP-A incorporation involves the canonical CENP-A deposition machinery, but displays distinct requirements from cell cycle-dependent deposition. We demonstrate that Plk1 is required specifically for G1 CENP-A deposition, whereas transcription promotes CENP-A incorporation in quiescent oocytes. Preventing CENP-A deposition during quiescence results in significantly reduced CENP-A levels and perturbs chromosome segregation following the resumption of cell division. In contrast to quiescent cells, terminally differentiated cells fail to maintain CENP-A levels. Our work reveals that quiescent cells actively maintain centromere identity providing an indicator of proliferative potential.

cell biology↗