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Biology subjects

Kempe, D.

Publications and source records attributed to Kempe, D..

3 recordsLinked to original sources

Fluorescently Labeled Gradient Hydrogels Reveal Matrix-Dependent Cell Responses to Substrate Stiffness

Microfabricated stiffness gradient hydrogels hold significant value for advancing mechanobiology, tissue engineering, and in vitro tissue models. However, it remains challenging to design these materials given their broad processing parameter space. The continuum of stiffness values also makes it difficult to precisely correlate the local substrate properties and observed biological responses, often relying on cumbersome characterization methods such as atomic force microscopy. To address these bottlenecks, we present a straightforward thermophoresis-based fabrication strategy to pattern stiffness gradients in fluorescein isothiocyanate-labeled hydrogel network, which displays a polymer concentration-dependent fluorescence readout. This approach enables quantitative assessment of the gradient formation process and contactless stiffness mapping via standard microscopy imaging. Using gelatin methacryloyl and Gellan gum as model systems, it is shown that substrate stiffness and extracellular matrix protein composition work together to affect 3T3-L1 fibroblast cell morphology and migration, with the underlying hydrogel type also affecting the outcome. By offering a simple and reliable approach for characterizing stiffness gradient hydrogels, this work advances the thermophoretic fabrication platform, opening avenues for new biomaterial systems for understanding and controlling the cell-material interplay.

bioengineering↗

Single molecule fingerprinting reveals different growth mechanisms in seed amplification assays for different polymorphs of alpha Synuclein fibrils.

Alpha-synuclein (Syn) aggregates, detected in the biofluids of patients with Parkinsons disease, have the ability to catalyze their own aggregation, leading to an increase in the number and size of aggregates. This self-templated amplification is used by newly developed assays to diagnose Parkinsons disease and turned the presence of Syn aggregates into a biomarker of the disease. It has become evident that Syn can form fibrils with slightly different structures, called "strains" or polymorphs, but little is known about their differential reactivity in diagnostic assays. Here we compared the properties of two well-described Syn polymorphs. Using single molecule techniques, we observed that one of the polymorphs had an increased tendency to undergo secondary nucleation and we showed that this could explain the differences of reactivity observed in in vitro seed amplification assay and cellular assays. Simulations and high-resolution microscopy suggest that a 100-fold difference in apparent rate of growth can be generated by a surprisingly low number of secondary nucleation "points" (1 every 2,000 monomers added by elongation). When both strains are present in the same seeded reaction, secondary nucleation displaces proportions dramatically and causes a single strain to dominate the reaction as the major end-product.

neuroscience↗

Niche-guided tissue patterning by chemomechanical flow lithography

Stem-cell derived tissue models are commonly cultured under globally-delivered stimuli that trigger histogenesis via self-organizing activity. However, the culture of such tissue models is prone to stochastic behavior, limiting the reproducibility of cellular composition and resulting in non-physiological architectures. To overcome these shortcomings, we developed a method for printing cell niche microenvironments with microstructured cues that mediate local histogenic processes, including mechanosensing and differentiation of selected cell types. Microstructured cues include independently tunable mechano-chemical properties, with conjugated peptides, proteins, and morphogens across a range of Youngs moduli. By rationally designing niches, we mediate the structure of tissues derived from stem-cell-progenitor sources, including a bone-fat assembly from stromal mesenchyme, and embryonic tissues derived from hiPSC. We show that microstructured cues can recapitulate mechano-chemical signals resembling early embryonic histogenesis. This outcome includes a role for niche mechanics in human embryonic organization, where soft niche mechanics bias markers of mesendodermal differentiation and epithelial-to-mesenchymal-transition (EMT), as well as a demonstration of a material-mediated morphogen signaling centers able to induce foci of mesenchymal and EMT differentiation. Thus, microstructured materials can mediate local histogenic processes to enhance the structure and composition of tissue models.

bioengineering↗