Biology subjects

Kazakou, E.

Publications and source records attributed to Kazakou, E..

6 recordsLinked to original sources

bioRxiv2025

FAIRTraits: an environmentally, methodologically and semantically enriched database of plant traits from Mediterranean populations of 240 species

Trait-based approaches have proven, and continue to offer strong potential to tackle key issues in ecology, including: (i) understanding the functioning of organisms and how it relates to the environment, (ii) identifying the rules governing the assembly of communities and the coexistence of species, (iii) understanding how the functioning of organisms scales up to that of ecosystems and controls some of the services they deliver to humans. We present FAIRTraits, a data set of plant traits assembled from a set of studies designed to address these issues in the pedo-climatic context of the Northern Mediterranean Basin, considered both a biodiversity and a climatic hotspot. The FAIR (Findable, Accessible, Interoperable and Reusable) guiding principles were followed to ensure maximum visibility and reusability of these data. FAIRTraits compiles and standardizes trait data collected over the 1997-2023 period on six sites by the same research group, ensuring that a consistent methodology was followed. These data were obtained on individuals from 1,955 populations of 240 species belonging to 155 genera and 48 families (172 herbaceous and 39 woody species). It contains 189,452 records for 183 quantitative traits from the different plant organs (leaves, stems, roots, and reproductive parts), which have been grouped into 10 categories: allocation ratio, architecture, chemistry, dynamics, mechanics, microbial associations, morphology, phenology, physiology and plant size. Trait values are given at the level of individual measurements. Species-level values of height and phenology taken from a Mediterranean flora are also given. Species are characterized by plant family, life cycle, Raunkiaer lifeform, photosynthetic pathway and by an original successional stage indicator value. As trait values strongly depend on environmental conditions, we also provide information on the climatic conditions and soil properties of the sites, as well as on disturbance regimes of the plots in which sampled individuals were collected. The following steps were taken to ensure the FAIRness of the data set. Findable: metadata are described using the Ecological Metadata Language, and are deposited both on the InDoRES (CNRS/MNHN) metadata catalogue and on the GBIF data portal (see below); Accessible: FAIRTraits is available on the InDoRES repository, with a subset available on the GBIF data portal (see below); Interoperable: recognized taxonomical and terminological resources to qualify taxa and attributes have been used whenever possible, and fully described sampling protocols and measurement methods are given both for traits and environmental data. A subset of the data could be mapped onto the Darwin Core biodiversity standard, making it possible to display part of the data set on the GBIF portal, more traditionally used for taxonomic occurrence data. Reusable: (meta)data are thoroughly described using domain-relevant community standards, and the full data set is released under the CC-BY 4.0 license. We believe that these multiple efforts, spanning from the very content of the data set to its careful formatting, will make of FAIRTraits a highly valuable resource for trait-based research, both in terms of data analysis and reusability.

ecology↗

bioRxiv2023

Climate and management changes drove more stress-tolerant and less competitive plant communities in 40 years

Spontaneous plant communities have undergone considerable constraints due to human-mediated changes. Understanding how plant communities are shifting in response to land management and climate changes is necessary to predict future ecosystem functioning and improve the resilience of managed ecosystems, such as agroecosystems. Using Mediterranean weed communities as models of managed plant communities in a climate change hotspot, we quantified to which extent they have shifted from the 1980s to the 2020s in response to climate and management changes in vineyards. In four decades, the annual range of temperatures (i.e. the difference between the warmest months and the coldest months mean temperatures) increased by 1.2{degrees}C and the summer temperatures by 2{degrees}C. Weed management diversified over time with the adoption of mowing that replaced the chemical weeding of inter-rows. Current weed communities were 41% more abundant, 24% more diverse and with a less even distribution of abundance across species than the 1980s communities at the vineyard level. Modern communities were composed of more annual species (57% of annual species in the 1980s versus 80% in the 2020s) with lower lateral spreadability and seed mass and were composed of fewer C4 species. They had higher community-weighted specific leaf area, higher leaf dry matter content and lower leaf area than 1980s weed communities. At the community level, the onset of flowering was earlier and the duration of flowering was longer in the 2020s. Climate change induced more stress-tolerant communities in the 2020s while the diversification of weed management practices over time filtered less competitive communities. This study shows that plant communities are adapting to climate change and that land management is a strong lever for action to model more diverse and functional plant communities in the future.

ecology↗

bioRxiv2021

Relative importance of region, seasonality and weed management practices effects on the functional structure of weed communities in French vineyards

Winegrowers have diversified their weed management practices over the last two decades changing the structure and the composition of weed communities. Complementary to taxonomic studies, trait-based approaches are promising ways for a better understanding of weed communities responses to environmental and agronomic filters. In the present study, the impact of climate, soil characteristics, seasons and weed management practices (chemical weeding, tillage and mowing) were assessed on weed communities in three French wine-growing regions (Champagne, Languedoc and Rhone valley). These agro-environmental gradients structuring weed communities according to their combination of traits were highlighted using multivariate analysis (RLQ). The impacts of these filters on Community Weighted Means (CWM) and the Community Weighted Variance (CWV) of weed communities were analysed using mixed and null modelling. Our results showed that spatio-temporal and weed management practices variables explained from 13% to 48% of the total variance of CWM (specific leaf area, maximum height, seed mass, flowering onset and duration and lateral spread). Region, seasonality and management practices explained 53%, 28% and 19% of CWM marginal variance, respectively. Weed management impacted CWM and CWV through two main gradients: (i) a soil disturbance gradient with high mechanical disturbance of soil in tilled plots and low mechanical disturbance in chemically weeded plots and (ii) a vegetation cover gradient with high vegetation abundance in mowed plots compared to more bare soils in tilled and chemically weeded plots. Chemically weeded communities showed trait values of ruderal strategies (low seed mass, small-stature) in Languedoc. Mowed plots were associated with more competitive strategies (higher seed mass, higher stature and lower SLA) in Languedoc. Tillage favoured communities with high seed mass that increases the viability of buried seeds and high lateral spread values associated to the ability to resprout after tillage in Languedoc and Champagne. This study demonstrated that trait-based approach can be successfully applied to perennial cropping systems such as vineyards, in order to understand community assembly to better guide weed management practices.

ecology↗

bioRxiv2020

Does seed mass drive interspecies variation in the effect of management practices on weed demography?

Optimizing the effect of management practices on weed population dynamics is challenging due to the difficulties in inferring demographic parameters in seed banks and their response to disturbance. Here, we used a long-term plant survey between 2006 and 2012 in 46 French vineyards and quantified the effects of management practices (tillage, mowing and herbicide) on colonization, germination and seed survival of 30 weed species in relation to their seed mass. To do so, we used a recent statistical approach to reliably estimate demographic parameters for plant populations with a seed bank using time series of presence-absence data, which we extended to account for interspecies variation in the effects of management practices on demographic parameters. Our main finding was that when the level of disturbance increased (i.e., in plots with a higher number of herbicide, tillage or mowing treatments), colonization and survival in large-seeded species increased faster than in small-seeded species. High disturbance through tillage increased survival in the seed bank of species with high seed mass. The application of herbicides, considered as an intermediate disturbance, increased germination, survival and colonization probabilities of species with high seed mass. Mowing, representing habitats more competitive for light, increased the survival of species with high seed mass. Overall, the strong relationships between the effects of management practices and seed mass provides an indicator for predicting the dynamics of weed communities under disturbance.

ecology↗

bioRxiv2018

Leaf economics guides slow-fast adaptation across the geographic range of A. thaliana

The slow-fast continuum describes how resource allocation constrains life-history strategies in many organisms. In plants, it is reflected by a trade-off at the leaf level between the rate of carbon assimilation and lifespan, the so-called Leaf Economics Spectrum (LES). However, it is still unclear how the LES is connected to the slow-fast syndrome, and reflects adaptation to climate. Here, we measured growth, morpho-physiological and life-history traits at both leaf and whole-plant levels in 384 natural accessions of Arabidopsis thaliana. We examined the extent to which the LES continuum parallels the slow-fast continuum, and compared trait variation to neutral genetic differentiation between lineages. We found that the LES is tightly linked to variation in whole-plant functioning, relative growth rate and life history. A genetic analysis further suggested that phenotypic differentiation is linked to the evolution of different slow-fast strategies in contrasted climates. Together, our findings shed light on the physiological bases of the slow-fast continuum, and its role for plant adaptation to climate.

ecology↗

bioRxiv2018

Climate as a driver of adaptive variations in ecological strategies in Arabidopsis thaliana

Background and aimsThe CSR classification categorizes plant species between stress-tolerators, ruderals (R) and competitors (C). Initially proposed as a general framework to describe ecological strategies at the interspecific level, this scheme has recently been used to investigate the variation of strategies within species. For instance, ample variation along the S-R axis was found in Arabidopsis thaliana, with stress-tolerator accessions predominating in hot and dry regions.\n\nMethodsIn this study, the range of CSR strategies within A. thaliana was evaluated across 426 accessions originating from North Africa to Scandinavia. A position in the CSR strategy space was allocated for every accession based on three functional traits: leaf area, leaf dry matter content (LDMC) and specific leaf area (SLA). Results were related to climate at origin and compared to a previous study performed on the same species. Furthermore, the role of natural selection in phenotypic differentiation between lineages was investigated with Qst-Fst comparisons, using the large genetic information available for this species.\n\nKey resultsSubstantial variation in ecological strategies along the S-R axis was found in A. thaliana. By contrast with previous findings, stress-tolerator accessions predominated in cold climates, notably Scandinavia, where late flowering was associated with traits related to resource conservation such as high LDMC and low SLA. Because of trait plasticity, variations in CSR classification to growth conditions were also observed for the same genotypes.\n\nConclusionsThere is a latitudinal gradient of ecological strategies in A. thaliana as a result of within-species adaptation to climate. Our study also underlines the importance of growth conditions and of the methodology used for trait measurement, notably age versus stage measurement, to infer the strength and direction of trait-environment relationships. Taken together, this highlights the potential and limitations of the CSR classification to explain functional adaptation to the environment.

ecology↗