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Katja Buehler

Publications and source records attributed to Katja Buehler.

2 recordsLinked to original sources

Predicting functional neuroanatomical maps from fusing brain networks with genetic information

A central aim, from basic neuroscience to psychiatry, is to resolve how genes control brain circuitry and behavior. This is experimentally hard, since most brain functions and behaviors are controlled by multiple genes. In low throughput, one gene at a time, experiments, it is therefore difficult to delineate the neural circuitry through which these sets of genes express their behavioral effects. The increasing amount of publicly available brain and genetic data offers a rich source that could be mined to address this problem computationally. However, most computational approaches are not tailored to reflect functional synergies in brain circuitry accumulating within sets of genes. Here, we developed an algorithm that fuses gene expression and connectivity data with functional genetic meta data and exploits such cumulative effects to predict neuroanatomical maps for multigenic functions. These maps recapture known functional anatomical annotations from literature and functional MRI data. When applied to meta data from mouse QTLs and human neuropsychiatric databases, our method predicts functional maps underlying behavioral or psychiatric traits. We show that it is possible to predict functional neuroanatomy from mouse and human genetic meta data and provide a discovery tool for high throughput functional exploration of brain anatomy in silico.

Neuroscience

Automatic segmentation of Drosophila neural compartments using GAL4 expression data reveals novel visual pathways

We made use of two recent, large-scale Drosophila GAL4 libraries and associated confocal imaging datasets to automatically segment large brain regions into smaller putative functional units such as neuropils and fiber tracts. The method we developed is based on the hypothesis that molecular identity can be used to assign individual voxels to biologically meaningful regions. Our results (available at https://strawlab.org/braincode) are consistent with this hypothesis because regions with well-known anatomy, namely the antennal lobes and central complex, were automatically segmented into familiar compartments. We then applied the algorithm to the central brain regions receiving input from the optic lobes. Based on the automated segmentation and manual validation, we can identify and provide promising driver lines for 10 previously identified and 14 novel types of visual projection neurons and their associated optic glomeruli. The same strategy can be used in other brain regions and likely other species, including vertebrates.

Neuroscience