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Karim, H.

Publications and source records attributed to Karim, H..

4 recordsLinked to original sources

Role of TbTim17 in mitochondrial stress tolerance in Trypanosoma brucei

Mitochondrial protein translocases Tim17 and Tim23 play important roles in stress-response pathways via activating the transcription factors, ATFS-1, to maintain organellar homeostasis. Trypanosoma brucei, a divergent eukaryote and the infectious agent for African trypanosomiasis, lacks ATFs but possesses TbTim17, an essential component of the TIM complex in mitochondria. However, it has not been investigated whether TbTim17 plays a role in the mitochondrial stress response. Here, we show that depletion of TbTim17 increased T. brucei tolerance to paraquat, increasing the EC50 by 3- to 4-fold compared with the wild type. Subsequent analysis revealed that increased levels of mitochondrial reactive oxygen species resulting from TbTim17 knockdown upregulate mitochondrial superoxide dismutase, thereby preadapting cells to resist paraquat-induced oxidative stress. This is supported by the finding that treating cells with N-acetyl cysteine during TbTim17 RNAi induction reduced the EC50 of paraquat to wild-type levels. TbTim17 knockdown also increased tolerance of T. brucei to heat stress. Either heat or oxidative stress did not increase mitochondrial heat shock protein 70 or Bip levels in the ER in T. brucei; instead, they moderately increased TbTim17 levels, which can replenish mitochondrial proteomes. Furthermore, TbTim17 knockdown caused a significant reduction in SL RNA and a 2- to 5-fold increase in tSNAP42 transcript levels, suggesting that mitochondrial stress is linked to the ER stress response pathway in T. brucei. Together, these results show that the mitochondrial stress response is primarily mediated by antioxidant defense mechanisms and that TbTim17 plays a protective role in mitochondria under stress in T. brucei. ImportanceTrypanosoma brucei, a parasitic protozoan, is the infectious agent of a deadly disease in humans and livestock known as African trypanosomiasis. TbTim17 is the major component of the TbTIM complex that imports hundreds of nuclear-encoded proteins into the mitochondrial matrix and inner membrane. Here, we show that depletion of TbTim17 induces oxidative stress, which upregulates mitochondrial antioxidant defense mechanisms to mitigate this stress. Subsequently, the SLS response is induced to eliminate the defective parasite from the population. In the wild-type parasite, TbTim17 levels are increased in mitochondria under oxidative and heat stresses, likely to replenish damaged mitochondrial proteomes. This is unlike in other eukaryotes, where oxidative stress degrades Tim17 to induce mitochondrial stress response. Understanding the mitochondrial stress response in T. brucei and the role of mitochondrial protein translocases in this process is critical for elucidating the mechanisms of adaptation to environmental stresses and drug resistance in this parasite.

Cell Biology↗

Differential control of mycobacteria among COVID-19 patients is associated with CD28+ CD8+ T cells

Diseases caused by SARS-CoV-2 and Mycobacterium tuberculosis (M.tb) represent two public health emergencies. In severe disease, both pathogens may share a biological niche in the lower respiratory tract. There is significant potential for SARS-CoV-2 and M.tb infections to be co-present within individuals and enhance or moderate the respective outcomes of either infection. Here, we investigated how whole blood samples, as well as CD4+ and CD8+ T cells, from individuals hospitalised with acute COVID-19 disease respond to mycobacterial challenge. To do this, samples were assessed by ex vivo mycobacterial growth inhibition assays, immune cell phenotyping by mass cytometry, and whole blood cytokine responses to mycobacterial antigens assessed by flow cytometry. These studies identified a subgroup of COVID-19 patients whose blood had an enhanced capacity to inhibit mycobacterial growth. The ability to control mycobacterial growth was associated with the presence of a non M.tb-specific CD28+ CD8+ T cell population, with a particular activation status and migratory phenotype. This work improves our understanding of factors involved in mycobacterial control, and may contribute to the design of novel therapies for TB.

immunology↗

Axonal spheroids are regulated by Schwann cells after peripheral nerve injury

Axonal spheroids are hallmark features of neurodegeneration, forming along degenerating axons and contributing to disease progression. Despite their ubiquity across degenerative etiologies, the dynamics of spheroid disappearance, as well as their interactions with glial cells, remain poorly understood. Here, using an in vivo zebrafish model of peripheral nerve injury, we identified several patterns of spheroid disappearance that are regulated by Schwann cells. These results describe spheroid dynamics across their lifetimes, establish a role for the extra-axonal environment in altering spheroid outcomes, and identify a cellular mechanism whereby spheroid fates are altered. SummaryO_LIAxonal spheroids (also called "dystrophic neurites," "axonal swellings," and "axonal beading") undergo three fates: shrinking, breakdown, and uniform disappearance C_LIO_LISchwann cells ensheath most axonal spheroids and internalize a subset of them C_LIO_LISchwann cells regulate axonal spheroid fates, identifying a role for axon-extrinsic processes in spheroid regulation C_LI O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=200 SRC="FIGDIR/small/622649v1_ufig1.gif" ALT="Figure 1"> View larger version (48K): org.highwire.dtl.DTLVardef@16084eeorg.highwire.dtl.DTLVardef@1b72b17org.highwire.dtl.DTLVardef@6e2b47org.highwire.dtl.DTLVardef@db4ccb_HPS_FORMAT_FIGEXP M_FIG O_FLOATNOGraphical Abstract:C_FLOATNO Following injury, spheroids are more likely to undergo shrinking and breakdown when Schwann cells (SCs) are present on degenerating axons. When Schwann cells are absent, spheroids are more likely to undergo uniform disappearance. Spheroids expose phosphatidylserine, which could facilitate interactions between spheroids and SCs. C_FIG

neuroscience↗

Multimodal magnetic resonance imaging predicts regional amyloid-β burden in the brain

Alzheimers disease (AD) is the most common cause of dementia and identifying early markers of this disease is important for prevention and treatment strategies. Amyloid - {beta} protein deposition is one of the earliest detectable pathological changes in AD. But in-vivo detection of amyloid - {beta} using positron emission tomography (PET) is hampered by high cost and limited geographical accessibility. These factors can become limiting when PET is used to screen large numbers of subjects into prevention trials when only a minority are expected to be amyloid- {beta} - positive. Structural MRI is advantageous; as it is relatively inexpensive and more accessible. Thus it could be widely used in large studies, even when frequent or repetitive imaging is necessary. We used a machine learning, pattern recognition, approach using intensity-based features from individual and combination of MR modalities (T1 weighted, T2 weighted, T2 fluid attenuated inversion recovery [FLAIR], susceptibility weighted imaging) to predict voxel-level amyloid- {beta} in the brain. The MR- amyloid {beta} relation was learned within each subject and generalized across subjects using subject-specific features (demographic, clinical, and summary MR features). When compared to other modalities, combination of T1-weighted, T2-weighted FLAIR, and SWI performed best in predicting the amyloid- {beta} status as positive or negative. T2- weighted performed the best in predicting change in amyloid- {beta} over two timepoints. Overall, our results show feasibility of amyloid- {beta} prediction by MRI.

bioengineering↗