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Biology subjects

Kaldis, A.

Publications and source records attributed to Kaldis, A..

2 recordsLinked to original sources

GIBBERELLIN SIGNALING THROUGH RGA SUPPRESSES GCN5 EFFECT ON STAMEN ELONGATION OF ARABIDOPSIS FLOWERS

Histone acetyltransferases (HAT) modify the amino-terminal tails of the core histone proteins via acetylation, regulating chromatin structure and transcription. The GENERAL CONTROL NON-DEREPRESSIBLE 5 (GCN5) is a HAT that specifically acetylates H3K14 residues. GCN5 has been associated with cell division and differentiation, meristem function, root, stem, foliar and floral development, and plant environmental response. The flowers of gcn5-6 plants display reduced length of stamen and exhibit male sterility relative to the wild-type plants. We show these effects may arise from gibberellin (GA) signaling defects. The signaling pathway of bioactive GAs depends on the proteolysis of their repressors, DELLA proteins. The DELLA protein, REPRESSOR OF GA (RGA), represses plant growth, inflorescence, flower and seed development. Our molecular data indicate that GCN5 is required for activation and H3K14 acetylation of genes involved in the late stages of GA biosynthesis and catabolism. We studied the genetic interaction of RGA and GCN5; RGA can partially suppress GCN5 action. The reduced elongation of the stamen filament of gcn5-6 mutants is reversed in the rga-t2;gcn5-6 double mutants. This mechanism involved suppressing the GCN5 effect on the expression and histone acetylation in GAI-locus by RGA. Interestingly, RGA and RGL2 do not suppress ADA2b function, suggesting that ADA2b acts downstream in GA signaling and is distinct from GCN5 activity. In conclusion, we propose that the action of GCN5 on stamen elongation is mediated partially by RGA and GA signaling.

plant biology↗

Identification of watermelon genes involved in the ZYMV interaction through a miRNA bioinformatics analysis and characterization of ATRIP and RBOHB

Small RNA sequencing of healthy and ZYMV-infected watermelon (21 dpi) was performed and bioinformatics analysis identified 353 miRNAs from which 22 known and 331 new miRNAs. Important information about their precursors, their length, the loci of which they originated on watermelon genome are provided. The ZYMV genome could be a target for mir396a-3p, miR8706a, and miR1886i-5p from the miRbase, but none of them was identified in the watermelon miRNAome. Furthermore, watermelon miRNAome does not contain a miRNA targeting ZYMV genome with an expectation score [≤] 3.5. There were 34 resistance genes (CC-NBS-LRR, TIR-NBS-LRR, TIR-NBS) predicted as targets of 32 miRNAs in healthy watermelon. For nine differentially expressed miRNAs the respective target genes (10 in total) were bioinformatically predicted. For cla-new_miR307 (upregulated upon ZYMV infection) and cla-miR166h-3p (downregulated upon ZYMV infection) the targets were predicted to be ClaATRIP and ClaRBOHB, respectively, with ClaATRIP downregulated and ClaRBOHB upregulated upon ZYMV infection. ALSV-mediated VIGS of ClaATRIP rendered watermelon plants more resistant to ZYMV, whereas VIGS of ClaRBOHB resulted in higher levels of ZYMV titer in watermelon. These data suggest that ClaATRIP and ClaRBOHB are a susceptibility and resistant gene, respectively. Our results provide new insights in watermelon miRNAome and could propose new strategies for generating resistant watermelon to ZYMV. HighlightsO_LIBioinformatics analysis in healthy and ZYMV-infected watermelon plants gave 353 miRNAs, 22 known and 331 new. C_LIO_LIThe watermelon miRNAome identified in the present study does not appear to target the ZYMV genome (sense and reverse complement). C_LIO_LIThe differential expression of ten genes of watermelon in relation to ZYMV infection was validated. C_LIO_LIThe silencing of the two genes, ATRIP and RBOHB, through VIGS strongly suggested that ATRIP is a gene of susceptibility and RBOHB is a gene of resistance. C_LI

plant biology↗