Biology subjects

Kaindoa, E. W.

Publications and source records attributed to Kaindoa, E. W..

7 recordsLinked to original sources

bioRxiv2025

Distinct Genetic Populations and Resistance Backgrounds of the Malaria Vector Anopheles funestus in Tanzania

Population genetic analysis of mosquitoes is becoming increasingly important for understanding the distribution of insecticide resistance alleles, devising sustainable insecticide-based vector control approaches, and how malaria vector populations are structured in space. Anopheles funestus is the dominant malaria vector in Tanzania and most parts of East and Southern Africa. To better understand its population genomic structure in Tanzania, we sequenced the genomes of 334 individual An. funestus mosquitoes from 11 administrative regions. We found two genetically differentiated populations; one inland and at high altitude (found in Katavi, Kagera, Kigoma, and Mwanza) and a second coastal, at low altitude (found in Pwani, Morogoro, Tanga, Ruvuma, Mtwara, Dodoma, and Lindi), with differences in genetic diversity and inbreeding. We found asynchronous selective sweeps, associated with insecticide resistance phenotypes, at the Cyp9k1 gene, and Cyp6p gene cluster, with distinct copy number-variant profiles between the coastal and inland populations. These results suggest that inland and coastal An. funestus populations have divergent histories, with the arid, central region of Tanzania, which also contains the Rift Valley being a possible barrier to gene flow. Such population disconnectedness should be considered for insecticide deployment, resistance management, and the rollout of novel genetic- based vector control approaches. These findings provide the most detailed study of Tanzanian An. funestus population structure and resistance genetics to date. Future research should examine the epidemiological relevance of this discontinuity in gene flow and whether these populations have different malaria transmission abilities.

genetics↗

bioRxiv2024

Genomic diversity of the African malaria vector Anopheles funestus

Anopheles funestus s.s. is a formidable human malaria vector across sub-Saharan Africa. To understand how the species is evolving, especially in response to malaria vector control, we sequenced 656 modern specimens (collected 2014-2018) and 45 historic specimens (collected 1927-1967) from 16 African countries. We find high levels of genetic variation with clear and stable continental patterns. Six segregating inversions might be involved in adaptation of local ecotypes. Strong recent signals of selection centred on canonical insecticide resistance genes are shared by multiple populations. A promising gene drive target in An. gambiae is highly conserved in An. funestus. This work represents a significant advance in our understanding of the genetic diversity and population structure of An. funestus and will enable smarter targeted malaria control.

genomics↗

bioRxiv2024

Comparative attractiveness of Anopheles quadriannulatus and Anopheles arabiensis to humans estimated by comparing the relative abundance of these two species in larval samples, unbaited adult catches and human-baited adult catches.

Understanding mosquito vector behaviour, abundance, and bionomics is crucial for effective malaria prevention. Since most malaria parasites in humans are strict anthroponoses, mosquito preference for humans as a blood source is a key determinant of transmission intensity and intervention strategies. This study compares the attraction of Anopheles arabiensis and Anopheles quadriannulatus to humans by assessing their relative abundance in larval samples and adult mosquito catches using unbaited and human-baited traps. The research investigated how the abundance of these sibling species varies with the local availability of humans, livestock, and wildlife as potential blood sources. Surveys of larval and adult mosquito populations were conducted at 40 mobile camping locations distributed across a landscape mosaic of different habitat types, with a gradient of land use practices ranging from comprehensive conversion to agriculture and human settlement to essentially intact natural ecosystems inside well-protected conservation areas. Larvae were collected from all accessible water bodies within a 2 km radius of each mobile camp, while adults were surveyed using four light traps and one interception netting barrier trap at each camp. Light traps were strategically placed at locations such as beside a human-occupied tent, near the camp, in a nearby streambed, and in an open natural glade, while the netting barrier trap was placed in the open natural glade. Most adult Anopheles gambiae complex mosquitoes caught were unfed and presumably host-seeking. The mean catches of the complex in light traps next to the human-occupied tent was over four times higher than elsewhere around the camp (p<<0.0001). Catches decreased with distance from humans, suggesting attraction to humans by at least one species in the complex. An. arabiensis was caught in greater numbers in the human-occupied tent, while An. quadriannulatus catches remained consistently low across all traps, even in wild areas where it was dominant in larval population. The proportion of An. arabiensis in adult collections was higher than in larval samples (98.7% versus. 78.3%, p<<0.0001), and adults caught beside human-occupied tents had 36 times higher odds of being An. arabiensis rather than An. quadriannulatus. Similarly, the barrier trap away from humans but frequently visited by researchers showed a 24-fold enrichment of An. arabiensis. These results confirm the strong attraction of An. arabiensis to humans, contrasting with the non-vector An. quadriannulatus, which is largely unresponsive to humans. Light traps by human-occupied tents efficiently capture anthropophagic mosquitoes outdoors, while unbaited traps far from people appear to give unbiased representations of larval population composition but with very low efficiency. Moreover, netting barriers with human activity attract anthropophagic mosquitoes, turning them into semi-baited traps with moderate efficiency.

ecology↗

bioRxiv2024

Blood host preferences and competitive inter-species dynamics within an African malaria vector species complex inferred from signs of animal activity around aquatic larval habitats.

The dual-specialized behavioural adaptions of Anopheles arabiensis, to feed readily upon either people or cattle, enable it to thrive and mediate persistent residual malaria transmission across much of Africa, despite widespread use of long-lasting insecticidal nets (LLINs). Indeed, LLIN scale up has often resulted in it dominating the more efficient but vulnerable malaria vector Anopheles gambiae, its sibling species within a complex of the latter name. However, the feeding behaviours and competitive relationships of An. arabiensis with other sibling species in well conserved natural ecosystems, where its known preferred hosts are scarce or absent, remain largely unexplored. Potential aquatic habitats were surveyed for An. gambiae complex larvae across a gradient of natural ecosystem integrity in southern Tanzania, encompassing fully domesticated human settlements, a partially encroached Wildlife Management Area (WMA), and well conserved areas of the recently gazetted Nyerere National Park (NNP) before substantive development of tourist access or accommodation. Direct observations, tracks, spoor and other signs of human, livestock or wild animal activity around these water bodies were recorded as indirect indicators of potential blood source availability. While only An. arabiensis was found in fully domesticated ecosystems, its non-vector sibling species An. quadriannulatus occurred in conserved areas and dominated the most intact natural ecosystems. Proportions of larvae identified as An. arabiensis were positively associated with human and/or cattle activity and negatively associated with distance inside NNP and away from human settlements. Proportions of An. quadriannulatus were positively associated with activities of impala and bushpig, implicating both as likely preferred blood hosts. While abundant impala and lack of humans or cattle in intact acacia savannah within NNP apparently allowed it to dominate An. arabiensis, presence of bushpig seemed to provide it with a foothold in miombo woodlands of the WMA, despite encroachment by people and livestock. While this antelope and suid are essentially unrelated, both are non- migratory residents of small home ranges with perennial surface water, representing preferred hosts for An. quadriannulatus that are widespread across extensive natural ecosystems all year round. Despite dominance of An. quadriannulatus in well-conserved areas, An. arabiensis was even found in absolutely intact environments >40km inside NNP, suggesting it can survive on blood from one or more unidentified wild species. While self-sustaining refuge populations of An. arabiensis inside conservation areas, supported by wild blood hosts that are fundamentally beyond the reach of insecticidal interventions targeted at humans or their livestock, may confound efforts to eliminate this key malaria vector, they might also enable insecticide resistance management strategies that could restore the effectiveness of pyrethroids in particular.

ecology↗

bioRxiv2024

Discovery of knock-down resistance in the major malaria vector Anopheles funestus reveals the legacy of persistent DDT pollution.

A major mechanism of insecticide resistance in insect pests is knock-down resistance (kdr) caused by mutations in the voltage-gated sodium channel (Vgsc) gene. Despite being common in most malaria Anopheles vector species, kdr mutations have never been observed in Anopheles funestus, the principal malaria vector in Eastern and Southern Africa. While monitoring 10 populations of An. funestus in Tanzania, we unexpectedly found resistance to DDT, a banned insecticide, in one location. Through whole-genome sequencing of 333 An. funestus samples from these populations, we found 8 novel amino acid substitutions in the Vgsc gene, including the kdr variant, L976F (L1014F in An. gambiae), in tight linkage disequilibrium with another (P1842S). The mutants were found only at high frequency in one region, with a significant decline between 2017 and 2023. Notably, kdr L976F was strongly associated with survivorship to the exposure to DDT insecticide, while no clear association was noted with a pyrethroid insecticide (deltamethrin). Further study is necessary to identify the origin and spread of kdr in An. funestus, and the potential threat to current insecticide-based vector control in Africa. SignificanceKnock-down resistance (kdr) mutations confer resistance to malaria vector control insecticides and pose a grave threat to malaria control. Here, we report the first discovery of kdr in An. funestus, the principal malaria vector in East and Southern Africa. Kdr in An. funestus conferred resistance to DDT but not deltamethrin. Based on extensive DDT contamination and unofficial usage in Tanzania, it is possible that kdr emerged because of widespread organic pollution as opposed to through public health efforts. Regardless of origin, the discovery of kdr in An. funestus is an alarming development that warrants immediate, extensive follow-up and close surveillance to establish the origin, and extent to which it may threaten malaria control in An. funestus.

genetics↗

bioRxiv2022

Common predators and factors influencing their abundance in Anopheles funestus aquatic habitats in rural south-eastern Tanzania

BackgroundThe role that larval predators play in regulating the population of malaria vectors remains relatively unknown. This study aimed to investigate the common predators that co-exist with Anopheles funestus group larvae and evaluate factors that influence their abundance in rural south-eastern Tanzania. MethodsMosquito larvae and predators were sampled concurrently using standard dipper (350 ml) or 10 L bucket in nine villages in southern Tanzania. Predators were identified using standard identification keys. All positive habitats were geo-located and their physical features characterized. Water physicochemical parameters such as dissolved oxygen (DO), pH, electrical conductivity (EC), total dissolved solids (TDS) and temperature were also recorded. ResultsA total of 85 previously identified An. funestus aquatic habitats were sampled for larvae and potential predators. A total of 8,295 predators were sampled. Of these Coenagrionidae 57.7% (n=4785), Corixidae 12.8% (n=1,060), Notonectidae 9.9% (n=822), Aeshnidae 4.9% (n=405), Amphibian 4.5% (n=370), Dytiscidae 3.8% (n=313) were common. A total of 5,260 mosquito larvae were sampled, whereby Anopheles funestus group were 60.3% (n= 3,170), Culex spp. 24.3% (n= 1,279), An. gambie s.l. 8.3% (n= 438) and other anophelines 7.1% (n= 373). Permanent and aquatic habitats larger than 100m2 were positively associated with An. funestus group larvae (P<0.05) and predator abundance (P<0.05). Habitats with submerged vegetation were negative associated with An. funestus group larvae (P<0.05). Only dissolved oxygen (DO) was positively and significantly affect the abundance of An. funestus group larvae (P<0.05). While predators abundance were not impacted by all physicochemical parameters. ConclusionSix potential predator families were common in aquatic habitats of An. funestus larvae group. Additional studies are needed to demonstrate the efficacy of different predators on larval density and adult fitness traits. Interventions leveraging the interaction between mosquitoes and predators can be established to disrupt the transmission potential and survival of the An. funestus mosquitoes.

ecology↗

bioRxiv2022

Challenges of Proper Disposal of Old Long-Lasting Insecticidal Nets and its Alternative Uses in Rural South-Eastern Tanzania

IntroductionInsecticide-treated nets (ITNs) specifically long-lasting insecticidal nets (LLINs) are one of the most commonly used, scalable and cost-effective tools for controlling malaria transmission in sub-Saharan Africa. However, multiple alternative uses of retired LLINs have been observed and are associated with poor disposal practices. Nevertheless, the World Health Organisation (WHO) provided guidelines and recommendations for proper management of worn-out LLINs. This study assessed the existing alternative uses and disposal practices of old LLINs. MethodsAn explanatory sequential mixed-methods approach was used to assess LLINs existing alternative uses, disposal practices, knowledge and perceptions regarding WHO recommendations on proper disposal of old LLINs among stakeholders in Kilombero and Ulanga districts, southe-astern Tanzania. A survey questionnaire was administered to 384 respondents, Focus Group Discussions (FGD) and Key Informant Interviews (KII) were conducted to clarify responses regarding existing disposal practices with associated challenges and alternative uses of the LLINs. Findings from both study components were used to draw inferences. ResultsA total of 384 people surveyed, 97% were not aware of the WHO recommendation on proper disposal of old LLINs. The common methods used to dispose LLINs were burning 30.73%, disposing of into garbage pit 14.84% and alternative uses 12.24 %. Of respondents with LLINs (239); 41% had alternative uses while 59% had no alternative uses. The common alternative uses were ropes for tying or covering items 20.92%, garden fencing 7.53%, chicken coops 5.02% and 7.53% for other minor alternative uses. All key informants reported being unaware of the WHO guideline on the proper disposal of the old LLINs. ConclusionThis study demonstrates that despite participants limited knowledge on WHO guidelines for proper disposal of old LLINs, after presenting these guidelines, majority are willing to comply. Comprehensive efforts are therefore needed to address challenges associated with poor disposal, alternative uses and awareness about WHO guidelines among key stakeholders. Collection strategies should be agreed upon within the community members prior to replacement. Since alternative uses sometimes referred to as repurposing of old nets, proper guidelines should be developed to ensure that repurposing of old LLINs do not cause harm to human health and the environment.

ecology↗