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Kagerer, F.

Publications and source records attributed to Kagerer, F..

2 recordsLinked to original sources

SingleBehavior Lab: behavioral sequencing and phenotyping with lightweight task specific adaptation

Understanding behavioral differences between experimental groups and quantifying action structure in behavioral experiments remains challenging. Currently, most approaches rely on pose estimation followed by downstream classification, resulting in assay specific pipelines with substantial annotation requirements. Here we present SingleBehavior Lab (SBL), a framework for modeling behavior across experimental contexts using a standardized graphical interface. SBL leverages spatiotemporal embeddings from large video foundation models and combines them with lightweight contrastive adapters, a multi-head attention pooling (MAP) module and a temporal decoder to enable behavior sequencing and task-specific refinement. The framework supports few-shot learning, allowing small models trained on pretrained embeddings to improve action segmentation and classification with limited labeled data, without fine-tuning the underlying video model. In parallel, a large segmentation model with motion-aware memory is used to extract object-centered representations that, together with shared spatiotemporal embeddings, enable unsupervised clustering of behavioral states and analysis of their structure, including cluster prioritization, transition dynamics and attention-based interpretability. Across multiple assays and species, SBL supports identification of group-level differences and rare behaviors, and provides a basis for integrating behavioral representations across experimental contexts.

neuroscience↗

Controlling a robotic arm for functional tasks using a wireless head-joystick: A case study of a child with congenital absence of upper and lower limbs

Children with movement impairments needing assistive devices for activities of daily living often require novel methods for controlling these devices. Body-machine interfaces, which rely on body movements, are particularly well-suited for children as they are non-invasive and have high signal-to-noise ratios. Here, we examined the use of a head-joystick to enable a child with congenital absence of all four limbs to control a seven degree-of-freedom robotic arm. Head movements were measured with a wireless inertial measurement unit and used to control a robotic arm to perform two functional tasks - a drinking task and a block stacking task. The child practiced these tasks over multiple sessions; a control participant performed the same tasks with a manual joystick. Our results showed that the child was able to successfully perform both tasks, with movement times decreasing by ~40-50% over 6-8 sessions of training. The childs performance with the head-joystick was also comparable to the control participant using a manual joystick. These results demonstrate the potential of using head movements for the control of high degree-of-freedom tasks in children with limited movement repertoire.

neuroscience↗