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Biology subjects

Kafka, A.

Publications and source records attributed to Kafka, A..

2 recordsLinked to original sources

Disruption of the ganglioside-PMCA-Np nexus leads to impaired calcium homeostasis in glioblastoma

Glioblastoma (GBM), an exceedingly invasive brain tumor, is characterized by the disruption of multiple signaling pathways, particularly those governing calcium homeostasis. Additionally, cell membranes in GBM exhibit altered lipidomic profiles, especially complex sialoglycans gangliosides, which affect plasma membranes both structurally and functionally. In this work we show a disruption of a plasma membrane molecular triad composed of gangliosides, neuroplastin (Np), and plasma membrane calcium ATPase (PMCA) in GBM, leading to a severely diminished PMCA activity. Our transcriptomic, epigenetic, proteomic, lipidomic, and in silico analyses consistently demonstrated downregulation of Np and PMCA isoforms both at mRNA and protein levels in our GBM cohort, in agreement with a broader trend observed in public datasets. Analysis of the uniquely changed GBM ganglioside profile in the context of PMCA and Np expression and PMCA activity reveals GD3 as a key molecular determinant of reduced PMCA activity in GBM samples. In contrast, GD1b, necessary for optimal PMCA function in healthy tissue, is significantly reduced in GBM. Our findings establish the gangliosides-PMCA-Np nexus as a crucial complex involved in calcium signaling in GBM, contributing to GBM etiology and progression.

neuroscience↗

Comparable genomic copy number aberrations differ across astrocytoma malignancy grades

Malignancy grades of astrocytomas were analyzed for copy number aberrations by aCGH. Altogether 1438 CNA were found of which losses prevailed. We searched for regions that are more likely to drive cancer pathogenesis with Bioconductor package and Genomic Identification of Significant Targets in Cancer. On our total sample significant deletions affected 14 chromosomal regions, out of which deletions at 17p13.2, 9p21.3, 13q12.11, 22q12.3 remained significant even at 0.05 q-value. When divided to malignancy groups, the regions identified as significantly deleted in high grades were: 9p21.3; 17p13.2; 10q24.2; 14q21.3; 1p36.11 and 13q12.11, while amplified were: 3q28; 12q13.3 and 21q22.3. Low grades comprised significant deletions at 3p14.3; 11p15.4; 15q15.1; 16q22.1; 20q11.22 and 22q12.3 indicating their involvement in early stages of tumorigenesis. Significantly enriched pathways brought by DAVID software were PI3K-Akt, Cytokine-cytokine receptor, NODlike receptor, Jak-STAT, RIG-II-like receptor and Toll-like receptor pathways. HPV and herpex simplex infection and inflammation pathways were also represented. Present study brings new data to astrocytoma research amplifying the wide spectrum of changes which could help us identify the regions critical for tumorigenesis.

cancer biology↗