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Jussi Tohka

Publications and source records attributed to Jussi Tohka.

2 recordsLinked to original sources

Functional brain segmentation using inter-subject correlation in fMRI

The human brain continuously processes massive amounts of rich sensory information. To better understand such highly complex brain processes, modern neuroimaging studies are increasingly utilizing experimental setups that better mimic daily-life situations. We propose a new exploratory data-analysis approach, functional segmentation intersubject correlation analysis (FuSeISC), to facilitate the analysis of functional magnetic resonance (fMRI) data sets collected in these experiments. The method provides a new type of functional segmentation of brain areas, not only characterizing areas that display similar processing across subjects but also areas in which processing across subjects is highly variable.\n\nWe tested FuSeISC using fMRI data sets collected during traditional block-design stimuli (37 subjects) as well as naturalistic auditory narratives (19 subjects). The method identified spatially local and/or bilaterally symmetric clusters in several cortical areas, many of which are known to be processing the types of stimuli used in the experiments. The method is not only prominent for spatial exploration of large fMRI data sets obtained using naturalistic stimuli, but has other potential applications such as generation of a functional brain atlases including both lower-and higher-order processing areas.\n\nFinally, as a part of FuSeISC, we propose a criterion-based sparsification of the shared nearest-neighbor graph for detecting clusters in noisy data. In our tests with synthetic data, this technique was superior to well-known clustering methods, such as Ward's method, affinity propagation and K-means++.

Neuroscience

Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

Machine learning approaches have been widely used for the identification of neuropathology from neuroimaging data. However, these approaches require large samples and suffer from the challenges associated with multi-site, multi-protocol data. We propose a novel approach to address these challenges, and demonstrate its usefulness with the Autism Brain Imaging Data Exchange (ABIDE) database. We predict symptom severity based on cortical thickness measurements from 156 individuals with autism spectrum disorder (ASD) from four different sites. The proposed approach consists of two main stages: a domain adaptation stage using partial least squares regression to maximize the consistency of imaging data across sites; and a learning stage combining support vector regression for regional prediction of severity with elastic-net penalized linear regression for integrating regional predictions into a whole-brain severity prediction. The proposed method performed markedly better than simpler alternatives, better with multi-site than single-site data, and resulted in a considerably higher cross-validated correlation score than has previously been reported in the literature for multi-site data. This demonstration of the utility of the proposed approach for detecting structural brain abnormalities in ASD from the multi-site, multi-protocol ABIDE dataset indicates the potential of designing machine learning methods to meet the challenges of agglomerative data.

Neuroscience