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Biology subjects

Jeong, N.

Publications and source records attributed to Jeong, N..

2 recordsLinked to original sources

Topological spatial coding for rapid generalization in the hippocampal formation

The brain navigates complex environments by combining entorhinal grid codes with hippocampal place codes. Although grid codes effectively represent a current environments geometry, their capacity to generalize across topologically analogous environments with different reward and state structures remains poorly understood. We introduce topology-aware grid coding (TAG), a computational theory that leverages topological invariance to generalize to new environments with the same topological structure but with different geometry. Drawing on the Euler characteristic from algebraic topology, TAG integrates complementary neural codes built on foundational grid bases: place codes serving as 0D vertices for self-localization, boundary codes acting as 1D edges to learn policy-independent grid codes through state prediction errors, and corner codes functioning as 2D faces for identifying topologically significant states. TAG grid codes remain stable under topology-preserving deformations yet discriminate among non-isomorphic structures. TAG develops policy-independent grid codes for novel structures more rapidly and robustly than existing approaches, balancing structure and policy encoding for multi-subgoal navigation without extensive planning. Finally, we show that TAG is compatible with transformer architectures, enabling its integration into scalable neural networks. Together, the TAG theory describes the essential nature of geometric objects to explain how the entorhinal-hippocampal system maps the unique topological structure of spaces.

neuroscience↗

Genetic Diversity Patterns and Domestication Origin of Soybean

Understanding diversity and evolution of a crop is an essential step to implement a strategy to expand its germplasm base for crop improvement research. Samples intensively collected from Korea, which is a small but central region in the distribution geography of soybean, were genotyped to provide sufficient data to underpin genome-wide population genetic questions. After removing natural hybrids and duplicated or redundant accessions, we obtained a non-redundant set comprising 1,957 domesticated and 1,079 wild accessions to perform population structure analyses. Our analysis demonstrates that while wild soybean germplasm will require additional sampling from diverse indigenous areas to expand the germplasm base, the current domesticated soybean germplasm is saturated in terms of genetic diversity. We then showed that our genome-wide polymorphism map enabled us to detect genetic loci underling flower color, seed-coat color, and domestication syndrome. A representative soybean set consisting of 194 accessions were divided into one domesticated subpopulation and four wild subpopulations that could be traced back to their geographic collection areas. Population genomics analyses suggested that the monophyletic group of domesticated soybeans was originated in eastern Japan. The results were further substantiated by a phylogenetic tree constructed from domestication-associated single nucleotide polymorphisms identified in this study.

plant biology↗