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Biology subjects

Jayachandran, R. B.

Publications and source records attributed to Jayachandran, R. B..

3 recordsLinked to original sources

Conserved dimerization architecture in C-type lectins from virus-vector mosquitoes

C-type lectins (CTLs) play key roles in innate immunity and microbial carbohydrate recognition. In the disease vector mosquito Aedes aegypti, the CTLD-S family comprises 34 soluble CTLs whose members are implicated in flavivirus dissemination and microbial homeostasis, yet their structure and organization remain uncharacterized. Here, we combine X-ray crystallography, small-angle X-ray scattering (SAXS), molecular dynamics, and machine learning-based structure prediction to characterize CTLs in Aedes aegypti. We determined the crystal structures of four representative CTLD-S proteins: mosGCTL-1, -3, -6, and -20. All crystals featured mosGCTL proteins in an identical homodimer arrangement, positioning both carbohydrate-binding sites on the same molecular face. Dimerization was confirmed in solution and AlphaFold predictions across the entire CTLD-S family indicated that dimer formation may be a unifying feature of mosquito CTLD-S proteins. For one mosGCTL structure, paucimannose glycans bound at a Ca2+-dependent site, demonstrating bi-dentate glycan-binding through one dimer. Finally, machine learning based predictions indicated hundreds of possible CTLD-S heterodimers may be viable, with wide-ranging implications for preferred glycan binding through one dimer. Our findings reveal a conserved dimeric arrangement among mosquito lectins that may underpin carbohydrate recognition relevant to vector-pathogen interactions.

biochemistry↗

Open and closed forms of assembled henipavirus nucleoprotein suggest structural basis of genome access

Henipaviruses, such as Nipah virus, can cause deadly illness and constitute WHO blueprint priorities due to their pandemic potential. Their genomes are packaged within a nucleocapsid consisting of viral nucleoproteins (N). Currently, it is unclear how the encapsidated genome is released from N to allow the viral polymerase to read its sequence. Here, we present the first high-resolution cryo-EM structure of a helical N-RNA filament from Langya henipavirus (LayV), allowing us to identify vertical interactions crucial for assembly. We show that assembly eficiency is sequence-dependent and prefers 5-genomic sequences. Further, we solve the structure of an RNA-free assembly of LayV N. Structural comparison of the RNA-bound and RNA-free LayV N shows a conformational opening and closing, even within the assembled state. Our data suggest that N within nucleocapsids may undergo local conformational changes, switching between closed and open states, to temporarily allow access to the encapsidated RNA without nucleocapsid disruption.

microbiology↗

Structural landscape of engineered multivalent antibody fragments and their application as crystallization scaffolds

Multivalent recombinant antibody fragments, "multibodies", are produced by fusing antibody VH and VL domains and provide the ability to bind multiple antigens simultaneously. The oligomeric state of a multibody is believed to be determined by the length of the linker region between the V-domains, with longer linkers resulting in diabodies (60 kDa) and shorter linkers leading to the formation of triabodies (90 kDa), tetrabodies (120 kDa), and larger oligomers. In this work, we investigate this design space by engineering multibodies from the sequences of human mAbs CR57 and Imdevimab, and resolve their crystal structures at 2.25 [A] and 2.55 [A] resolution, respectively. Our results show that despite minimizing the length of the hinge region between the V-domains, these constructs form diabodies. This indicates that linker length is not the sole determinant of a multibodys oligomeric state, and additional factors such as the mAb origin species and light chain type must also be taken into account when designing multibodies. Moreover, we confirmed that the native paratope of the antibody is well- maintained in the diabody format, and conducted a proof-of-concept trial comparing the crystallization propensity of a diabody versus a Fab in antibody-antigen complex crystallization. Our results show that a diabody can promote crystallization more effectively than a Fab, demonstrating the potential of diabodies as crystallization scaffolds for antibody- antigen complexes.

molecular biology↗