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Biology subjects

Jarvis, D. E.

Publications and source records attributed to Jarvis, D. E..

2 recordsLinked to original sources

LEAF SHAPE OF QUINOA WILD ANCESTOR CHENOPODIUM HIRCINUM IN A GEOGRAPHIC CONTEXT

PremiseIntraspecific variation in plant traits, such as leaf morphology, offers insights into local adaptation and the ecological niche breadth of species. Chenopodium hircinum, the wild ancestor of quinoa, is widely distributed across various ecoregions in Argentina. A detailed comparative analysis of leaf morphology across 23 populations covering its entire distribution was conducted to understand patterns of intraspecific variation along geographic gradients. Materials and MethodsUsing 104 leaves from these populations, leaf shapes were described through shape, landmarks, and Fourier descriptors. Both univariate and multivariate analyses were employed to evaluate variations among and within populations and to link leaf shape patterns with climatic and geographical variables at the sites of origin. ResultsA significant variability in leaf shapes was found across all ecoregions, with marked integration among populations. While landmark-based and Fourier analyses differentiated populations, shape descriptors introduced complexity in identification. Leaf morphology varied widely, from rounded and toothed to sharply lobed, with prominent lobes located at the base or middle of the leaf. The key environmental factors influencing leaf shape, particularly lobulation and relative positioning, were mean annual temperature and altitude. ConclusionsThe findings suggest that in C. hircinum, leaf shape variability goes beyond the simple lobed vs. entire dichotomy and is shaped by environmental temperatures. Leaf morphology and margin traits are primarily governed by the relative position of the lobes, which are strongly correlated with the mean temperature at the populations origin. This convergence across different ecoregions highlights the need for further research to explore the functional significance of such variation.

plant biology↗

Genome assembly of a diversity panel of Chenopodium quinoa

Quinoa (Chenopodium quinoa) is an important crop for the future challenges of food and nutrient security. Deep characterization of quinoa diversity is needed to support the agronomic improvement and adaptation of quinoa as its worldwide cultivation expands. In this study, we report the construction of chromosome-scale genome assemblies of eight quinoa accessions covering the range of phenotypic and genetic diversity of both lowland and highland quinoas. The assemblies were produced from a combination of PacBio HiFi reads and Bionano Saphyr optical maps, with total assembly sizes averaging 1.28 Gb with a mean N50 of 71.1 Mb. Between 43,733 and 48,564 gene models were predicted for the eight new quinoa genomes, and on average, 66% of each quinoa genome was classified as repetitive sequences. Alignment between the eight genome assemblies allowed the identification of structural rearrangements including inversions, translocations, and duplications. These eight novel quinoa genome assemblies provide a resource for association genetics, comparative genomics, and pan-genome analyses for the discovery of genetic components and variations underlying agriculturally important traits.

genomics↗