Biology subjects

Jahnke, M.

Publications and source records attributed to Jahnke, M..

5 recordsLinked to original sources

bioRxiv2026

Slow Dynamics Differentially Determine the Robustness of Regular Pacemaking: Distinct Subpopulations of Midbrain Dopamine Neurons Illustrate the Principle

Pacemaking neurons, often found in mammalian nervous systems, integrate their inputs differently than quiescent neurons. Rhythmic single-spike pacemaking that is robust to noise can be achieved with a slow process that enforces a "resting potential" at each point along a ramp-like interspike interval (ISI) coupled with a fast restorative component. To demonstrate this phenomenon, we modeled previously identified distinct subpopulations of midbrain dopamine neurons that differed in projection target and in the regularity of their pacemaking. In the model of the more regularly-firing subpopulation projecting to the dorsomedial striatum, KV4 current was recruited by a deep after-hyperpolarizing potential (AHP) mediated by the SK channel. In the model of the less regularly-firing subpopulation projecting to the medial shell of the nucleus accumbens, the AHP was too shallow to recruit the KV4 current. In the more regularly firing population, the trajectory in the phase space of membrane potential and slow inactivation of KV4 was confined to move slowly through a narrow channel during the ramp-like portion of the ISI. Noisy perturbations from this channel were quickly damped by fast activation of KV4. In contrast, the smaller AHP in the model of the subpopulation projecting to the medial shell of the nucleus accumbens failed to recruit Kv4-mediated current, therefore the narrow channel was never entered, greatly decreasing the regularity in the presence of noise. This mechanism may be broadly applicable to single-spike pacemakers and explains how slow pacemaking with small net currents can be robust to fluctuations in single channel openings. Author SummaryPacemaking cells spike at regular intervals without the need for external input. There are numerous examples of pacemaking cells in the nervous system. We show that a process with slow dynamics relative to the individual spikes can make regular pacemaking robust to the noise that is always present in biological systems.

neuroscience↗

bioRxiv2026

Nullcline Analysis Provides Dynamic Mechanisms for the Differences in Electrical Activity of Distinct Subpopulations of Midbrain Dopamine Neurons

Previously, electrophysiological differences between subpopulations of midbrain dopamine (DA) neurons were identified based on projection targets, including distinct responses to hyperpolarization and in the regularity of pacemaking. Here we explored single-compartment models of three subpopulations of DA neurons, projecting to medial shell of the nucleus accumbens (VTA-mNAcc), dorsomedial striatum (SNc-DMS) or dorsolateral striatum (SNc-DLS). We reduced the dimensionality to a phase plane consisting of membrane potential and one slow variable, either total slow potassium conductance or Kv4 channel inactivation. Nullclines are curves on which the rate of change of each variable is zero, given the value of the other variable. The voltage nullclines had three branches: upper spiking, unstable middle, and lower quiescent branch. Recruitment of Kv4 channels by the more prominent after-hyperpolarizing potential (AHP) in the DA-DMS and DA-DLS models channels stabilized pacemaking by creating a restorative moving fixed point along the quiescent branch. The slow inactivation of KV4 channels dominated and regularized the dynamics during the interspike interval; a dominant slow process may be a general mechanisn for stable regular pacemaking in a frequency range between 1-10 Hz. In contrast, the smaller AHP in VTA-mNAcc models prevented recruitment of this Kv4-mediated moving fixed point, which increased the sensitivity to synaptic inputs. On rebound from hyperpolarization the ability to produce robust ramps reverses between the DA neurons: now VTA-mNAcc projecting DA models fully recruited Kv4 channels and produced stable ramp-like pauses, whereas SNc-DLS projecting cells recruited significant regenerative inward CaV3 channels that overwhelmed Kv4 channels and produced rebound bursts. Author SummaryMidbraim dopamine (DA) neurons in the mammalian midbrain are linked to motivation, control of voluntary movement initiation, and reward-based learning. Their dysfunction is implicated in major disorders like Parkinsons disease, schizophrenia or substance use disorders. Firing patters like bursts or pauses in most DA subpopulations are thought to signal better or worse than expected outcomes. Here we use dynamic systems analysis to capture how functional diversity of DA neurons of their intrinsic properties results in differences of synaptic input integration leading to the generation of burst and pause patterns of electrical activity.

neuroscience↗

bioRxiv2024

Connectivity and population structure in a marginal sea - a review

The current biodiversity crisis calls for conservation measures that limit the negative human impact on important habitats and sensitive wild populations. To effectively protect biodiversity at all levels, including intraspecific diversity, conservation measures should be aligned with the connectivity and genetic structure of wild populations. In this review, we synthesise scientific literature on the connectivity and population structure of marine species in the Skagerrak - a marginal sea in the northeast Atlantic Ocean. We discuss the results in relation to the current management practices in the region, as well as the general transferability of our findings. The Skagerrak is one of the most intensively studied regions within this research field, and our findings show that the overall connectivity with adjacent seas is high, but asymmetric, for most species. Simultaneously, most species have populations in the Skagerrak distinct from both each other, and those in adjacent seas. Most of this population structure is associated with the convoluted Skagerrak coastline - population structure is common both among coastal populations and between coastal and offshore populations. In many mobile species, multiple populations are temporally sympatric in certain areas, but retain their genetic divergence through natal homing or other barriers to gene flow. The presence of population structure despite high connectivity is a challenge for area-based protection measures, and calls for temporally flexible management that also monitors intraspecific genetic diversity on multiple timescales.

ecology↗

bioRxiv2022

Ocean currents drive the worldwide colonization of the most widespread marine plant, eelgrass (Zostera marina)

Currents are unique drivers of oceanic phylogeography and so determine the distribution of marine coastal species, along with past glaciations and sea level changes. Here, we reconstruct the worldwide colonization history of eelgrass (Zostera marina L.), the most widely distributed marine flowering plant or seagrass from its origin in the Northwest Pacific, based on nuclear and chloroplast genomes. We identified two divergent Pacific clades with evidence for admixture along the East Pacific coast. Multiple west to east (trans-Pacific) colonization events support the key role of the North Pacific Current. Time-calibrated nuclear and chloroplast phylogenies yielded concordant estimates of the arrival of Z. marina in the Atlantic through the Canadian Arctic, suggesting that eelgrass-based ecosystems, hotspots of biodiversity and carbon sequestration, have only been present since [~]208 Kya (thousand years ago). Mediterranean populations were founded [~]53 Kya while extant distributions along western and eastern Atlantic shores coincide with the end of the Last Glacial Maximum ([~]20 Kya). The recent colonization and 5-to 7-fold lower genomic diversity of Atlantic compared to the Pacific populations raises concern and opportunity about how Atlantic eelgrass might respond to rapidly warming coastal oceans.

evolutionary biology↗

bioRxiv2022

Finding coarse and fine scale population structure in a coastal species: population demographics meets genomics

Population genetic studies often focus on patterns at a regional scale and use spatially aggregated samples to draw inferences about population structure and drivers, potentially masking ecologically relevant population sub-structure and dynamics. In this study we use a multidisciplinary approach combining genomic, demographic, and habitat data with an oceanographic particle drift model, to unravel the patterns of genetic structure at different scales in the black goby (Gobius niger) along the Norwegian coast. Using a high-density sampling protocol, we observed restricted gene flow both at a surprisingly fine (kms) and large (100s km) scale. Our results showed a pattern of isolation by distance related to the level of exposure along the Skagerrak coast, where sheltered sampling stations had an overall level of genetic divergence about three times higher (FST =0.0046) than levels observed among exposed samples (FST =0.0015). These results were corroborated by demographic analyses which showed that population-fluctuations decrease in synchrony with distance at much smaller scales for sheltered samples (20 km) than for exposed sites (80 km), suggesting higher population connectivity among exposed sites. We also found a pronounced genetic discontinuity between populations along the Norwegian west and east coasts, with a sharp "break" around the southern tip of Norway, likely driven both by lack of habitat and by oceanographic features.

genomics↗