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Iyengar, K.

Publications and source records attributed to Iyengar, K..

2 recordsLinked to original sources

Consistent MYORG and STRADB Downregulation in DMD and LGMD: Rationale for Deoxygalactonojirimycing Repurposing in Dystrophic and Aging Muscle

Background: MYORG is an activity-dependent skeletal muscle gene implicated in frailty and sarcopenia. We hypothesized that, if sustained by contractile activity, it should be downregulated in muscular dystrophies, and sought protein-level confirmation of this hypothesis. Methods: We performed a systematic cross-dataset transcriptomic analysis of five GEO microarray datasets of human skeletal muscle, followed by protein-level validation in an independent human dystrophic muscle proteomics dataset (PXD050694). Transcriptomic discovery used GSE3307 (DMD, LGMD2A/B/I, BMD, FSHD, JDM, ALS, AQM versus controls); validation used GSE38417, GSE11681, GSE465, and GSE1007. After NUSE/RLE quality control, arrays were RMA-normalized and differential expression assessed by limma with Benjamini-Hochberg correction. Proteomics data were extracted from a Proteome Discoverer MSF database via SQLite and quantified as MS1 intensity per patient group. Results: In GSE3307, MYORG was significantly downregulated in DMD (logFC=-0.93), LGMD2A (-0.82), LGMD2B (-1.01), and LGMD2I (-1.03; all adj.P<0.01). MYORG downregulation in DMD was replicated in GSE38417 (-1.40) and GSE1007 (-0.80; both adj.P<0.001). Critically, proteomic validation (PXD050694) confirmed that MYORG protein is depleted by 98% in DMD and 89% in BMD relative to controls, a loss far exceeding the transcriptional reduction and indicating additional proteostatic degradation in the dystrophic environment. Deoxygalactonojirimycin (DGJ), the active moiety of the approved chaperone migalastat, is a specific molecular interactor that stabilizes MYORG protein; the profound protein-level depletion provides the strongest mechanistic basis for a pharmacological chaperone strategy targeting residual MYORG rescue in DMD. Conclusions: MYORG is robustly and reproducibly downregulated in DMD and LGMD. Proteomic validation in an independent human dystrophic muscle dataset (PXD050694) confirms that MYORG protein is depleted by 98% in DMD and 89% in BMD relative to controls, establishing that the transcriptional signal is accompanied by profound protein-level loss and strengthening the rationale for a pharmacological chaperone strategy. The migalastat-MYORG interaction provides a mechanistic rationale for repurposing this approved agent and for iminosugar analogs targeting MYORG in dystrophies, frailty, and sarcopenia.

genomics↗

MYORG and STRADB as Activity-Dependent Therapeutic Targets for Frailty Prevention: Discovery and Cross-Cohort Validation in Aging Skeletal Muscle

BackgroundSkeletal muscle aging exhibits substantial heterogeneity, with some individuals maintaining robust function into advanced age while others develop sarcopenia and frailty. Whether molecular signatures distinguishing these trajectories reflect biological aging or modifiable factors, such as physical activity, remains unclear. MethodsAn integrated discovery-validation study was conducted on skeletal muscle transcriptomes. Discovery analysis used the GSE144304 dataset comprising vastus lateralis biopsies from young adults (n=26, aged 18-30 years), fit elderly (n=30, aged 65-80 years with preserved function), and frail elderly (n=24, aged 65-80 years stratified by grip strength). Top 10 most significantly altered genes were validated across five independent transcriptomic studies (n=184 total) strategically selected to represent distinct activity contexts: activity-controlled aging, sedentary aging, mixed-activity aging, disease-impaired aging, and exercise intervention. Expression of two established atrogenes were examined (FBXO32/Atrogin-1 and TRIM63/MuRF-1) as benchmarks. ResultsDiscovery analysis identified 10 genes with profound age-related changes (adjusted p < 10-{superscript 2}{superscript 1}, |log2FC| > 1.3). Cross-dataset validation revealed striking activity-dependence: genes downregulated with aging in sedentary populations (MYORG, STRADB) showed maintained or increased expression in active elderly individuals (80% validation rate, r = 0.75-0.82 with activity level). In contrast, established atrogenes showed poor replication (25-50%) and context-dependent patterns. C4ORF54 expression strongly correlated with grip strength (r = 0.68, p < 0.001), with age effects disappearing after phenotype adjustment, indicating purely phenotype-mediated expression. Critically, sedentary versus active aging datasets showed opposing transcriptional patterns (r = -0.68), demonstrating that activity confounds conventional age-based signatures. ConclusionsMolecular signatures distinguishing fit from frail aging predominantly reflect physical activity levels rather than inevitable biological processes. MYORG and STRADB emerge as activity-responsive biomarkers of muscle health, while C4ORF54 serves as an indicator of functional capacity. These findings challenge conventional atrogene paradigms and suggest that exercise-responsive AMPK signaling pathways represent immediately translatable therapeutic targets for preserving muscle function in older adults.

molecular biology↗