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Biology subjects

Ijaq, J.

Publications and source records attributed to Ijaq, J..

3 recordsLinked to original sources

Comparative metabolomics of released pollen during dispersal reveals metabolic adaptations to cold and heat stress

Heat and cold stress can severely impair released pollen, reducing pollen viability and ultimately limiting fertilization and crop productivity. Following release, pollen is directly exposed to fluctuating environmental temperatures, necessitating adaptive metabolic mechanisms to sustain viability during dispersal. In response to temperature stress, pollen undergoes metabolic reprogramming that supports biochemical and physiological adaptation. However, the metabolic basis of pollen tolerance to extreme temperatures remains incompletely understood. In this study, biochemical assays combined with LC-MS-based untargeted metabolomic profiling were employed to investigate metabolic changes in released pollen exposed to low (15 {degrees}C) and high (35 {degrees}C) temperature stress. A total of 484 metabolites were detected, of which 147 were significantly altered between cold- and heat-stressed pollen, including 61 upregulated and 86 downregulated metabolites. Differentially regulated metabolites spanned multiple classes, including amino acids, flavonoids, long-chain fatty acids, sugars, and polyamines. Pathway enrichment analysis highlighted biologically relevant perturbations in amino acid and nucleic acid metabolism, including purine metabolism, arginine biosynthesis, and glutathione metabolism. Collectively, these findings demonstrate temperature-dependent metabolic adjustments in released pollen and provide new insights into the biochemical strategies underlying pollen tolerance to heat and cold stress. This work advances our understanding of pollen metabolic adaptation during dispersal and provides a foundation for identifying metabolic indicators relevant to crop fertility under changing climatic conditions. These findings provide a metabolomic framework for understanding pollen thermotolerance during dispersal and offer a resource for future studies on reproductive resilience under climate change.

plant biology↗

Genome-Wide Mining, Characterization and Development of miRNA-SSRs in Arabidopsis thaliana

Simple Sequence Repeats (SSRs), also known as microsatellites are short tandem repeats of DNA sequences that are 1-6 bp long. In plants, SSRs serve as a source of important class of molecular markers because of their hypervariabile and co-dominant nature, making them useful both for the genetic studies and marker-assisted breeding. The SSRs are widespread throughout the genome of an organism, so that a large number of SSR datasets are available, most of them from either protein-coding regions or untranslated regions. It is only recently, that their occurrence within microRNAs (miRNA) genes has received attention. As is widely known, miRNA themselves are a class of non-coding RNAs (ncRNAs) with varying length of 19-22 nucleotides (nts), which play an important role in regulating gene expression in plants under different biotic and abiotic stresses. In this communication, we describe the results of a study, where miRNA-SSRs in full length pre-miRNA sequences of Arabidopsis thaliana were mined. The sequences were retrieved by annotations available at EnsemblPlants using BatchPrimer3 server with miRNA-SSR flanking primers found to be well distributed. Our analysis shows that miRNA-SSRs are relatively rare in protein-coding regions but abundant in non-coding region. All the observed 147 di-, tri-, tetra-, penta- and hexanucleotide SSRs were located in non-coding regions of all the 5 chromosomes of A. thaliana. While we confirm that miRNA-SSRs were commonly spread across the full length pre-miRNAs, we envisage that such studies would allow us to identify newly discovered markers for breeding studies.

bioinformatics↗

HYPO: A database of hypothetical human proteins

All annotated genes were once hypothetical or uncharacterized. Keeping this as an epilogue, we have enhanced our former database of hypothetical proteins (HP) in human (HypoDB) with added annotation, application programming interfaces and descriptive features. The database hosts 1000+ manually curated records of the known unknown regions in the human genome. The new updated version of HypoDB with functionalities (Blast, Match) is freely accessible at http://www.bioclues.org/hypo2.

bioinformatics↗