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Hruska, J.

Publications and source records attributed to Hruska, J..

2 recordsLinked to original sources

Forest growth responds more to air pollution than soil acidification

The forests of central Europe have undergone remarkable transitions in the past 40 years as air quality has improved dramatically. Retrospective analysis of Norway spruce (Picea abies) tree rings in the Czech Republic shows that air pollution (e.g. SO2 concentrations, high acidic deposition to the forest canopy) plays a dominant role in driving forest health. Extensive soil acidification occurred in the highly polluted "Black Triangle" in Central Europe, and upper mineral soils are still acidified. In contrast, acidic atmospheric deposition declined by 80% and atmospheric SO2 concentration by 90% between the late 1980s and 2010s. Annual tree ring width (TRW) declined in the 1970s and subsequently recovered in the 1990s, tracking SO2 concentrations closely. Furthermore, recovery of TRW was similar in unlimed and limed stands. Despite large increases in soil base saturation, as well as soil pH, as a result of repeated liming starting in 1981, TRW growth was similar in limed and unlimed plots. TRW recovery was interrupted in 1996 when highly acidic rim (originating from more pronounced decline of alkaline dust than SO2 from local power plants) injured the spruce canopy, but recovered soon to the pre-episode growth. Across the long-term site history, changes in soil chemistry (pH, base saturation, Bc/Al soil solution ratio) cannot explain observed changes in TRW at the two study sites at which we tracked soil chemistry. Instead, statistically significant recovery in TRW is linked to the trajectory of annual SO2 concentrations or sulfur deposition at all three stands.

ecology

De Novo Assembly of a Chromosome-Scale Reference Genome for the Northern Flicker Colaptes auratus

The northern flicker, Colaptes auratus, is a widely distributed North American woodpecker and a long-standing focal species for the study of ecology, behavior, phenotypic differentiation, and hybridization. We present here a highly contiguous de novo genome assembly of C. auratus, the first such assembly for the species and the first published chromosome-level assembly for woodpeckers (Picidae). The assembly was generated using a combination of short-read Chromium 10x and long-read PacBio sequencing, and further scaffolded with chromatin conformation capture (Hi-C) reads. The resulting genome assembly is 1.378 Gb in size, with a scaffold N50 of 43.948 Mb and a scaffold L50 of 11. This assembly contains 87.4 % - 91.7 % of genes present across four sets of universal single-copy orthologs found in tetrapods and birds. We annotated the assembly both for genes and repetitive content, identifying 18,745 genes and a prevalence of ~ 28.0 % repetitive elements. Lastly, we used four-fold degenerate sites from neutrally evolving genes to estimate a mutation rate for C. auratus, which we estimated to be 4.007 x 10-9 substitutions / site / year, about 1.5x times faster than an earlier mutation rate estimate of the family. The highly contiguous assembly and annotations we report will serve as a resource for future studies on the genomics of C. auratus and comparative evolution of woodpeckers.

genomics