Search bioRxiv⌕ Search

Biology subjects

Hoshi, H.

Publications and source records attributed to Hoshi, H..

4 recordsLinked to original sources

Pathway-specific short-term synaptic dynamics and lateral inhibition shape frequency-dependent input integration and population-level pattern separation in the dentate gyrus

The dentate gyrus (DG) decorrelates overlapping entorhinal inputs into distinct granule-cell representations, a computation central to pattern separation and to reducing interference in episodic memory. The three excitatory pathways to granule cells -- the lateral perforant path (distal dendrites), the medial perforant path (middle dendrites), and proximal inputs -- carry distinct short-term synaptic dynamics, but how these combine with lateral inhibition to set the frequency dependence of DG integration and pattern separation remains unclear. Here we integrate mechanism, function, and robustness into a single computational modeling study spanning three complementary model tiers, using Tsodyks-Markram short-term synaptic parameters grounded in prior slice electrophysiology. In a biophysically detailed 37-compartment granule-cell model (Tier 1), the distal (lateral) pathway facilitates at low frequency, the middle (medial) pathway depresses, and the proximal pathway is mixed, producing frequency- and pathway-dependent integration; three-pathway summation is mildly sublinear, and a direct granule-cell-to-granule-cell lateral inhibition -- a shunting connection emulating disynaptic feedforward inhibition without an explicit interneuron -- further attenuates it. In a reduced leaky-integrate-and-fire network with the same dynamics (Tier 2), pattern separation is frequency-dependent, rising to a gamma-band maximum at 40 Hz that is reproducible across independently wired networks, whereas the basket-cell-inhibition magnitude varies with the random connectivity. In a three-layer population network (Tier 3), pattern separation is robust: although single granule-cell spike counts are highly sensitive to input noise, the population-level separation code is nearly noise-invariant (a roughly 60-fold dissociation), and separation is governed by the magnitude of local lateral inhibition rather than its targeting. Two claims that hold at the single-cell scale -- a microsecond spike-timing-precision requirement and an advantage of finely targeted inhibition -- do not survive at the network scale. Pathway-specific synaptic dynamics and lateral inhibition thus shape frequency-dependent integration and noise-robust population pattern separation in the DG. Author SummaryThe dentate gyrus (DG) performs pattern separation: it takes overlapping cortical inputs and makes their DG representations more distinct, a computation thought to reduce memory interference. How does the DG do this? We approach the question across three scales in a single computational study. First (mechanism), we show in a biophysically detailed granule-cell model that the three anatomical input pathways carry different short-term synaptic dynamics -- the distal (lateral perforant path) input facilitates, the middle (medial perforant path) input depresses, and the proximal input is mixed -- so that the cells response depends on input frequency and pathway. Second (function), in a reduced network model we show that these dynamics, combined with lateral inhibition, tune pattern separation in a frequency-selective way. Third (robustness), we find that although a single granule cells spike count is highly sensitive to input noise, the population-level separation code is nearly noise-invariant -- a "noise paradox" in which population coding rescues what is fragile at the single-cell level. We also show that two claims that appear at the single-cell scale -- a microsecond spike-timing-precision requirement, and an advantage of finely targeted inhibition -- do not survive at the network scale: what matters is the amount of local inhibition, not how it is distributed. The synaptic parameters are grounded in prior slice recordings; the model integrates the mechanism.

neuroscience↗

Analytical methodology for unveiling the physical effect of detergents on the function of full-length membrane proteins using a single-molecule tracking system

G protein-coupled receptors (GPCRs) are important targets for drug discovery because they are the largest and most diverse family of membrane proteins in the human body. As exemplified by {beta}2-adrenergic receptor ({beta}2AR), which is a typical class-A GPCRs, they are prone to denaturation and inactivation after solubilization. Although diverse techniques have been developed, current structural and functional analyses are still limited to proteins with relatively stable and high expression. However, some mutant variants and misfolded proteins involved in diseases have extremely low expression levels and may be difficult to analyze. To overcome these limitations, we established a novel analytical platform for evaluating the ligand-binding ability of full-length {beta}2AR as a model at the single-molecule level without purification and addressing challenges such as membrane proteins with low expression levels and structural instability. This method enables the direct use of unpurified receptors immediately after solubilization and allows us to use only a small amount of sample ([~]10 ng) for observation and to distinguish between specific and nonspecific ligand binding by fitting. Furthermore, we unveiled the physical properties of detergents on the structural stability of solubilized receptors and found that the lateral pressure within detergent micelles affects ligand-binding ability. Detergents that provided a fluid microenvironment were able to maintain ligand-binding ability for several days even after solubilization; conversely, detergents that provided a rigid microenvironment caused the protein to lose its activity earlier. Our method could be a promising tool for the structural and functional analysis of membrane proteins untargeted until now. Graphical abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=112 SRC="FIGDIR/small/740883v1_ufig1.gif" ALT="Figure 1"> View larger version (46K): org.highwire.dtl.DTLVardef@3d274corg.highwire.dtl.DTLVardef@defd0forg.highwire.dtl.DTLVardef@1b81eb4org.highwire.dtl.DTLVardef@e7c275_HPS_FORMAT_FIGEXP M_FIG C_FIG

biophysics↗

Connectivity-based Meta-Bands: A new approach for automatic frequency band identification in connectivity analyses

The majority of electroencephalographic (EEG) and magnetoencephalographic (MEG) studies filter and analyse neural signals in specific frequency ranges, known as "canonical" frequency bands. However, this segmentation, is not exempt from limitations, mainly due to the lack of adaptation to the neural idiosyncrasies of each individual. In this study, we introduce a new data-driven method to automatically identify frequency ranges based on the topological similarity of the frequency-dependent functional neural network. The resting-state neural activity of 195 cognitively healthy subjects from three different databases (MEG: 123 subjects; EEG1: 27 subjects; EEG2: 45 subjects) was analysed. In a first step, MEG and EEG signals were filtered with a narrow-band filter bank (1 Hz bandwidth) from 1 to 70 Hz with a 0.5 Hz step. Next, the connectivity in each of these filtered signals was estimated using the orthogonalized version of the amplitude envelope correlation to obtain the frequency-dependent functional neural network. Finally, a community detection algorithm was used to identify communities in the frequency domain showing a similar network topology. We have called this approach the "Connectivity-based Meta-Bands" (CMB) algorithm. Additionally, two types of synthetic signals were used to configure the hyper-parameters of the CMB algorithm. We observed that the classical approaches to band segmentation reflect the underlying network topologies at group level for the MEG signals, but they fail to adapt to the individual differentiating patterns revealed by our methodology. On the other hand, the sensitivity of EEG signals to reflect this underlying frequency-dependent network structure is limited. To the best of our knowledge, this is the first study that proposes an unsupervised band segmentation method based on the topological similarity of functional neural network across frequencies. This methodology fully accounts for subject-specific patterns, providing more robust and personalized analyses, and paving the way for new studies focused on exploring the frequency-dependent structure of brain connectivity.

bioinformatics↗

Very Early Responses to Colour Stimuli Detected in Prestriate Visual Cortex by Magnetoencephalography (MEG)

Previous studies with the visual motion and form systems show that visual stimuli belonging to these categories trigger much earlier latency responses from the visual cortex than previously supposed and that the source of the earliest signals can be located in either the prestriate cortex or in both the striate (V1) and prestriate cortex. This is consistent with the known anatomical connections since, in addition to the classical retino-geniculo-striate cortex input, there are direct anatomical inputs from both the lateral geniculate nucleus and the pulvinar that reach the prestriate visual cortex without passing through V1. In pursuing our studies, we thought it especially interesting to study another cardinal visual attribute, namely colour, to learn whether colour stimuli also provoke very early responses, at less than 50 ms, from visual cortex. To address the question, we asked participants to view stimuli that changed in colour and used magneto-encephalography to detect very early responses (< 50 ms) in the occipital visual cortex. Our results show that coloured stimuli also provoke an early cortical response (M30), with an average peak time at 30.8 ms, thus bringing the colour system into line with the visual motion and form systems. We conclude that colour signals reach visual cortex, including prestriate visual cortex, earlier than previously supposed.\n\nKey points summaryO_LIWe measured visual evoked responses to colour stimuli using magnetoencephalography.\nC_LIO_LIAn early response was identified, at around 30 ms after stimulation.\nC_LIO_LIThe sources of the response were estimated to be in prestriate cortex.\nC_LIO_LIColour signals thus appear to evoke very early cortical responses, just like form and motion signals.\nC_LI\n\nAbbreviations list

neuroscience↗