Biology subjects

Hooper, R.

Publications and source records attributed to Hooper, R..

6 recordsLinked to original sources

bioRxiv2023

Pair-bond strength is consistent and related to partner responsiveness in a wild corvid

The need to maintain strong social bonds is widely held to be a key driver of cognitive evolution. This assumes that the maintenance of strong bonds is a stable trait that is cognitively demanding but generates fitness benefits, and so can come under selection. However, these fundamental micro-evolutionary tenets have yet to be tested together within a single study system. Combining observational and experimental behavioural data with long-term breeding records, we tested four key assumptions in wild jackdaws (Corvus monedula), corvids whose long-term pair-bonds exemplify the putative social drivers of cognitive evolution in birds. We found support for three assumptions: (1) pair-bond strength varies across the population, (2) is consistent within pairs over time and (3) is positively associated with a measure of socio-cognitive performance. However, we did not find evidence that stronger pair-bonds lead to better fitness outcomes (prediction 4). While strongly bonded pairs were better able to adjust hatching synchrony to environmental conditions, they did not fledge more or higher quality offspring. Together, these findings provide important evidence that the maintenance of strong pair bonds is linked to socio-cognitive performance and facilitates effective coordination between partners. However, they also imply that these benefits may not be sufficient to explain how selection acts on social cognition. We argue that evaluating how animals navigate trade-offs between investing in long-term relationships versus optimising interactions in their wider social networks will be a crucial avenue for future research.

animal behavior and cognition↗

bioRxiv2022

The calcium channel Orai1 is required for osteoblast development: studies in a chimeric mouse with variable in vivo Runx-cre deletion of Orai-1

The calcium-selective ion channel Orai1 has a complex role in bone homeostasis, with defects in both bone production and resorption detected in Orai1 germline knock-out mice. To determine whether Orai1 has a direct, cell-intrinsic role in osteoblast differentiation and function, we bred Orai1 flox/flox (Orai1f/f) mice with Runx2-cre mice to eliminate its expression in osteoprogenitor cells. Interestingly, Orai1 was expressed in a mosaic pattern in Orai1f/f-Runx2-cre bone. Specifically, antibody labeling for Orai1 in vertebral sections was uniform in wild type animals, but patchy regions in Orai1f/f-Runx2-cre bone revealed Orai1 loss while in other areas expression persisted. Nevertheless, by micro-CT, bones from Orai1f/f-Runx2-cre mice showed reduced bone mass overall, with impaired bone formation identified by dynamic histomorphometry. Cortical surfaces of Orai1f/f-Runx2-cre vertebrae however exhibited patchy defects. In cell culture, Orai1-negative osteoblasts showed profound reductions in store-operated Ca2+ entry, exhibited decreased alkaline phosphatase activity, and had markedly impaired substrate mineralization. We conclude that defective bone formation observed in the absence of Orai1 reflects an intrinsic role for Orai1 in differentiating osteoblasts.

developmental biology↗

bioRxiv2021

Problems with comparative analyses of avian brain size

There are multiple hypotheses for the evolution of cognition. The most prominent hypotheses are the Social Intelligence Hypothesis (SIH) and the Ecological Intelligence Hypothesis (EIH), which are often pitted against one another. These hypotheses tend to be tested using broad-scale comparative studies of brain size, where brain size is used as a proxy of cognitive ability, and various social and/or ecological variables are included as predictors. Here, we test how methodologically robust such analyses are. First, we investigate variation in brain and body size measurements across >1000 species of bird. We demonstrate that there is substantial variation in brain and body size estimates across datasets, indicating that conclusions drawn from comparative brain size models are likely to differ depending on the source of the data. Following this, we subset our data to the Corvides infraorder and interrogate how modelling decisions impact results. We show that model results change substantially depending on variable inclusion, source and classification. Indeed, we could have drawn multiple contradictory conclusions about the principal drivers of brain size evolution. These results reflect recent concerns that current methods in comparative brain size studies are not robust. We add our voices to a growing community of researchers suggesting that we move on from using such methods to investigate cognitive evolution. We suggest that a more fruitful way forward is to instead use direct measures of cognitive performance to interrogate why variation in cognition arises within species and between closely related taxa.

animal behavior and cognition↗

bioRxiv2020

Cooperative nest building in wild jackdaws

Animals create diverse structures, both individually and cooperatively, using materials from their environment. One striking example are the nests birds build for reproduction, which protect the offspring from external stressors such as predators and temperature, promoting reproductive success. To construct a nest successfully, birds need to make various decisions, for example regarding the nest material and their time budgets. To date, research has focused mainly on species where one sex is primarily responsible for building the nest. In contrast, the cooperative strategies of monogamous species in which both sexes contribute to nest building are poorly understood. Here we investigated the role of both sexes in nest building and fitness correlates of behaviour in wild, monogamous jackdaw pairs (Corvus monedula). We show that both partners contributed to nest building and behaved similarly, with females and males present in the nest box for a comparable duration and transporting material to the nest equally often. However, while females spent more time constructing the nest, males tended to invest more time in vigilance, potentially as a means of coping with competition for nest cavities. These findings suggest a moderate degree of division of labour, which may facilitate cooperation. Moreover, some aspects of behaviour were related to proxies of reproductive success (lay date and egg volume). Females that contributed relatively more to bringing material laid earlier clutches and pairs that spent less time together in the nest box had larger eggs. Thus, selection pressures may act on how nest building pairs spend their time and cooperatively divide the labour. We conclude that cooperative nest building in birds could be associated with monogamy and obligate biparental care, and provides a vital but relatively untapped context through which to study the evolution of cooperation. HighlightsO_LIIn wild monogamous jackdaws, mates behaved similarly and cooperated to build their nest. C_LIO_LIFemales built more and called more frequently; males tended to be more vigilant. C_LIO_LIFemales that contributed relatively more to transporting nest material laid earlier clutches. C_LIO_LIPairs that spent more time together in the nest box had smaller eggs. C_LIO_LICooperation may be crucial in light of obligate biparental care and nest site competition. C_LI

animal behavior and cognition↗

bioRxiv2020

Runs of homozygosity in killer whale genomes provide a global record of demographic histories

Runs of homozygosity (ROH) occur when offspring receive the same ancestral haplotype from both parents, and, accordingly, reduce individual heterozygosity. Their distribution throughout the genome contains information on the probability of inbreeding mediated by mating system and population demography. Here, we investigate variation in killer whale demographic history as reflected in genome-wide heterozygosity, using a global dataset of 26 genomes. We find an overall pattern of lower heterozygosity in genomes sampled at high latitudes, with hundreds of short ROH (< 1Mbp) reflecting high background relatedness due to coalescence of haplotypes during bottlenecks associated with founder events during post-glacial range expansions. Across most of the species range, intermediate length ROH (1-10Mb) revealed long-term inbreeding in 22 of the 26 sampled killer whale genomes, consistent with the high social philopatry observed in all populations studied to date. Inbreeding coefficients (FROH) were comparable to those reported in other taxa with long-term low population size, such as bonobos and the Native American Karitiana of the Brazilian Amazon. The extreme outlier in this dataset, a Scottish killer whale, was homozygous over one-third of the autosomes (41.6%) with a distinct distribution of ROH length, indicating generations of inbreeding. This exceeds autozygosity in emblematic examples of long-term inbreeding, such as the Altai Neanderthal, and eastern lowland and mountain gorillas. The fate of this Scottish killer whale population, in which no calves have been born in over two decades, may be inextricably linked to its demographic history and consequential inbreeding depression.

evolutionary biology↗

bioRxiv2018

Characterising the microbiome from host shotgun sequencing data: bacterial and diatom community dynamics derived from killer whale skin

Recent exploration into the interactions and relationship between hosts and their microbiota has revealed a connection between many aspects of the hosts biology, health and associated microorganisms. Whereas amplicon sequencing has traditionally been used to characterise the microbiome, the increasing number of published population genomics datasets offer an underexploited opportunity to study microbial profiles from the host shotgun sequencing data. Here, we use sequence data originally generated from killer whale Orcinus orca skin biopsies for population genomics, to characterise the skin microbiome and investigate how host social and geographic factors influence the microbial community composition. Having identified 845 microbial taxa from 2.4 million reads that did not map to the killer whale reference genome, we found that both ecotypic and geographic factors influence community composition of killer whale skin microbiomes. Furthermore, we uncovered key taxa that drive the microbiome community composition and showed that they are embedded in unique networks, one of which is tentatively linked to diatom presence and poor skin condition. Community composition differed between Antarctic killer whales with and without diatom coverage, suggesting that the previously reported episodic migrations of Antarctic killer whales to warmer waters associated with skin turnover may control the effects of potentially pathogenic bacteria such as Tenacibaculum dicentrarchi. Our work demonstrates the feasibility of microbiome studies from host shotgun sequencing data and highlights the importance of metagenomics in understanding the relationship between host and microbial ecology.

evolutionary biology↗