Biology subjects

Hontoria, F.

Publications and source records attributed to Hontoria, F..

4 recordsLinked to original sources

bioRxiv2024

Mitogenomic phylogeny and divergence time estimation of Artemia leach, 1819 (Branchiopoda: Anostraca) with emphasis on parthenogenetic lineages

Withdrawal statementThe authors have withdrawn this manuscript because the new version of this article has been developed based on the phylogenetic concept of "long branch length and long branch attraction (LBA)"and the validity of "relaxed clock and strict clock" methods for divergence time estimation. Therefore, the authors do not wish this work to be cited as reference for the project. If you have any questions, please contact the corresponding author.

evolutionary biology↗

bioRxiv2024

Elongation capacity of polyunsaturated fatty acids in the annelid Platynereis dumerilii

In animals, elongation of very long-chain fatty acid (Elovl) proteins play pivotal functions in the biosynthesis of fatty acids, including the physiologically essential long-chain polyunsaturated fatty acids (LC-PUFA). Polychaetes have important roles in marine ecosystems, contributing not only to nutrient recycling but also exhibiting a distinctive capacity for biosynthesising LC-PUFA, as emphasised in previous research. In order to expand our current understanding of the LC-PUFA biosynthesis in polychaetes, the present study conducted a thorough molecular and functional characterisation of Elovl occurring in the model organism Platynereis dumerilii. In this study, we identify six Elovl proteins in the genome of P. dumerilii. The sequence and phylogenetic analyses established that four Elovl, identified as Elovl2/5, Elovl4 (two genes) and Elovl1/7, have putative functions in the LC-PUFA biosynthesis. Functional characterisation in yeast confirmed the roles of these elongases in the LC-PUFA biosynthetic pathways, demonstrating that P. dumerilii possesses a varied and functionally diverse complement of Elovl enzymes that, along the enzymatic specificities of previously characterised desaturases, enable P. dumerilii to perform all the reactions required for the biosynthesis of the LC-PUFA. Importantly, we uncovered that one of the two Elovl4-encoding genes from P. dumerilii is remarkably long in comparison with any other animals Elovl, which contains a C terminal KH domain unique among Elovl enzymes. The distinctive expression pattern of this protein in photoreceptors strongly suggests a central role in vision.

biochemistry↗

bioRxiv2022

ZW sex-chromosome evolution and contagious parthenogenesis in Artemia brine shrimp

Eurasian brine shrimp (genus Artemia) have closely related sexual and asexual lineages of parthenogenetic females, which produce rare males at low frequencies. Although they are known to have ZW chromosomes, these are not well characterized, and it is unclear whether they are shared across the clade. Furthermore, the underlying genetic architecture of the transmission of asexuality, which can occur when rare males mate with closely related sexual females, is not well understood. We produced a chromosome-level assembly for the Eurasian species A. sinica and characterized in detail the pair of sex chromosomes of this species. We combined this with short-read genomic data for the sexual species A. sp. Kazakhstan and several lineages of A. parthenogenetica, allowing us to perform a first in-depth characterization of sex-chromosome evolution across the genus. We identified a small differentiated region of the ZW pair that is shared by all sexual and asexual lineages, supporting the shared ancestry of the sex chromosomes. We also inferred that recombination suppression has spread to larger sections of the chromosome independently in the American and Eurasian lineages. Finally, we took advantage of a rare male, which we backcrossed to sexual females, to explore the genetic basis of asexuality. Our results suggest that parthenogenesis may be partly controlled by a locus on the Z chromosome, highlighting the interplay between sex determination and asexuality.

evolutionary biology↗

bioRxiv2021

The origin of asexual brine shrimps

Determining how and how often asexual lineages emerge within sexual species is central to our understanding of sex-asex transitions and the long-term maintenance of sex. Asexuality can arise "by transmission" from an existing asexual lineage to a new one, through different types of crosses. The occurrence of these crosses, cryptic sex, variation in ploidy and recombination within asexuals greatly complicates the study of sex-asex transitions, as they preclude the use of standard phylogenetic methods and genetic distance metrics. In this study we show how to overcome these challenges by developing new approaches to investigate the origin of the various asexual lineages of the brine shrimp Artemia parthenogenetica. We use a large sample of asexuals, including all known polyploids, and their sexual relatives. We combine flow cytometry with mitochondrial and nuclear DNA data. We develop new genetic distance measures and methods to compare various scenarios describing the origin of the different lineages. We find that all diploid and polyploid A. parthenogenetica likely arose within the last 80,000 years through successive and nested hybridization events that involved backcrosses with different sexual species. All A. parthenogenetica have the same common ancestor and therefore likely carry the same asexuality gene(s) and reproduce by automixis. These findings radically change our view of sex-asex transitions in this group, and show the importance of considering asexuality "by transmission" scenarios. The methods developed are applicable to many other asexual taxa.

evolutionary biology↗