Biology subjects

Homma, R.

Publications and source records attributed to Homma, R..

3 recordsLinked to original sources

bioRxiv2021

Unsupervised functional neurocartography of the Aplysia buccal ganglion

A major limitation of large-scale neuronal recordings is the difficulty in locating homologous neurons in different subjects, referred to as the "correspondence" issue. This issue stems, at least in part, from the lack of a unique feature that unequivocally identifies each neuron. One promising approach to this problem is the functional neurocartography framework developed by Frady et al. (2016), in which neurons are identified by a semisupervised machine learning algorithm using a combination of multiple selected features. Here, the framework was adapted to the buccal ganglia of Aplysia. Multiple features were derived from neuronal activity during motor pattern generation, responses to peripheral nerve stimulation, and the spatial properties of each cell. The feature set was optimized based on its potential usefulness in discriminating neurons from each other, and then used to match putatively homologous neurons across subjects with the functional neurocartography software. An alternative matching method based on a cyclic matching algorithm was also developed, which allows for unsupervised extraction of groups of neurons and automated selection of high-quality matches. This improvement enabled unsupervised implementation of the machine learning algorithm, thereby enhancing scalability of the analysis. This study paves the way for investigating the roles of both well-characterized and previously uncharacterized neurons in Aplysia, and helps to adapt the neurocartography framework to other systems.

neuroscience↗

bioRxiv2019

Comparison of odor responses of homologous medial and lateral glomeruli mapped in the olfactory bulb of the mouse

Olfactory sensory neurons expressing same-type odorant receptors typically project to a pair of glomeruli in the medial and lateral sides of the olfactory bulbs (OBs) in rodents. However, their functional properties remain unclear, because the majority of medial glomeruli are hidden in the septal OB. Recently, trace amine-associated odorant receptors were identified that project to a pair of glomeruli uniquely located in the dorsal OB. We measured the odorant-induced calcium responses of these glomeruli simultaneously and found that they exhibited similar temporal response patterns. However, the medial glomeruli had significantly larger respiration-locked calcium fluctuations than the lateral glomeruli. This trend was observed with/without odorant stimulation in postsynaptic neurons but not in presynaptic sensory axon terminals. This indicates that the medial rather than the lateral OB map enhances the respiration-locked rhythm and transfers this information to higher brain centers.\n\nImpact StatementThis study used in vivo calcium imaging to document the odor-evoked responses in paired glomeruli, demonstrating that activation in medial glomeruli more strongly impacts respiratory-linked odor processing.

neuroscience↗

bioRxiv2018

Narrowly confined and glomerulus-specific onset latencies of odor-evoked calcium transients in the periglomerular cells of the mouse main olfactory bulb

Odor information is transmitted from olfactory sensory neurons to principal neurons at the glomeruli of the olfactory bulb. The intraglomerular neuronal circuit also includes hundreds of GABAergic interneurons referred to as periglomerular (PG) cells. Stimulus selectivity is well correlated among PG cells that are associated with the same glomerulus, consistent with their highly homogeneous sensory inputs. However, much less is known about the temporal aspects of their activity, including the temporal coordination of their odor-evoked responses. As many PG cells within a glomerular module respond to the same stimulus, the extent to which their activity is temporally aligned will affect the temporal profile of their population inhibitory inputs. Using random-access high-speed two-photon microscopy, we recorded the odor-evoked calcium transients of mouse PG cells and compared the onset latency and rise time among neurons putatively associated with the same and different glomeruli. Whereas the overall onset latencies of odor-evoked transients were distributed across a ~150 ms time window, those from cells putatively associated with the same glomerulus were confined to a much narrower window of several tens of milliseconds. This result suggests that onset latency primarily depends on the associated glomerulus. We also observed glomerular specificity in the rise time. The glomerulus-specific temporal pattern of odor-evoked activity implies that the temporal patterns of inhibitory inputs are unique to individual glomerulus-odor pairs, which may contribute to efficient shaping of the temporal pattern of activity in the principal neurons.

neuroscience↗