Search bioRxiv⌕ Search

Biology subjects

Hogan, M. P.

Publications and source records attributed to Hogan, M. P..

2 recordsLinked to original sources

Efficient mixed representation of active and passive motion in the mouse visual thalamus during natural behaviour

Most retinal motion is generated by the observer's movements. These are often self-generated (active) but can also arise from external forces such as gravity (passive). Active movements modulate spontaneous and visually evoked activity throughout the visual system, providing neural circuits with information about behavioural state. By contrast, much less is known about how visual circuits represent passive movements. Critically, it remains unclear whether the retina-recipient thalamus tracks passive motion and, if so, whether this representation is separable from active motion. To address these questions, we developed a paradigm that dissociates active and passive motion in freely moving mice and used it to examine their effects on neural activity. Mice actively explored an arena while intermittent floor tilts induced passive movement. By combining 3D reconstructions of animal pose and arena motion, we quantified active and passive linear and angular motion independently, even when they occurred simultaneously. We found that neurons in the dorsal lateral geniculate nucleus (dLGN) and surrounding regions tracked combinations of active and passive motion signals both in the dark and during visual stimulation. Individual neurons differentially weighted active and passive motion signals. This diversity enabled active and passive motion signals to be linearly decoded and partially separated from population activity, while recurrent dynamics retained passive motion information over timescales of several seconds. These findings identify a coding strategy through which early visual circuits integrate active and passive motion into an estimate of self-motion while preserving information about whether visual inputs arise from self-generated or externally imposed movements.

neuroscience↗

Chromosome-level reference genome for the medically important Arabian horned viper (Cerastes gasperettii)

Venoms have traditionally been studied from a proteomic and/or transcriptomic perspective, often overlooking the true genetic complexity underlying venom production. The recent surge in genome-based venom research (sometimes called "venomics") has proven to be instrumental in deepening our molecular understanding of venom evolution, particularly through the identification and mapping of toxin-coding loci across the broader chromosomal architecture. Although venomous snakes are a model system in venom research, the number of high-quality reference genomes in the group remains limited. In this study, we present a chromosome-resolution reference genome for the Arabian horned viper (Cerastes gasperettii), a venomous snake native to the Arabian Peninsula. Our highly-contiguous genome allowed us to explore macrochromosomal rearrangements within the Viperidae family, as well as across squamates. We identified the main highly-expressed toxin genes compousing the venoms core, in line with our proteomic results. We also compared microsyntenic changes in the main toxin gene clusters with those of other venomous snake species, highlighting the pivotal role of gene duplication and loss in the emergence and diversification of Snake Venom Metalloproteinases (SVMPs) and Snake Venom Serine Proteases (SVSPs) for Cerastes gasperettii. Using Illumina short-read sequencing data, we reconstructed the demographic history and genome-wide diversity of the species, revealing how historical aridity likely drove population expansions. Finally, this study highlights the importance of using long-read sequencing as well as chromosome-level reference genomes to disentangle the origin and diversification of toxin gene families in venomous species.

genomics↗