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Biology subjects

Heili, J. M.

Publications and source records attributed to Heili, J. M..

3 recordsLinked to original sources

One-pot cloning and protein expression platform for genetic engineering

In this work, we present a streamlined one-pot cloning and protein expression platform that integrates mutagenesis, plasmid assembly, and functional protein testing in a single reaction. By combining Golden Gate cloning with cell-free transcription-translation, we demonstrate efficient generation and screening of genetic variants without the need for intermediate purification or bacterial amplification. Using fluorescent proteins, luciferase enzymes, antibiotic-converting enzymes, and the violacein biosynthetic pathway, we validate the versatility of this approach for single-and multi-site mutagenesis, combinatorial variant libraries, metabolic pathway programming, and whole-plasmid assembly. By demonstrating compatibility with multiplexed reactions and multi-cistronic constructs, we establish this approach as a generalizable and automatable method for high-throughput cloning and protein engineering in synthetic biology.

bioengineering↗

Controlled exchange of protein and nucleic acid signals from and between synthetic minimal cells

Synthetic minimal cells are a class of small liposome bioreactors that have some, but not all functions of live cells. Here, we report a critical step towards the development of a bottom-up minimal cell: cellular export of functional protein and RNA products. We used cell penetrating peptide tags to translocate payloads across a synthetic cell vesicle membrane. We demonstrated efficient transport of active enzymes, and transport of nucleic acid payloads by RNA binding proteins. We investigated influence of a concentration gradient alongside other factors on the efficiency of the translocation, and we show a method to increase product accumulation in one location. We demonstrate the use of this technology to engineer molecular communication between different populations of synthetic cells, to exchange protein and nucleic acid signals. The synthetic minimal cell production and export of proteins or nucleic acids allows experimental designs that approach the complexity and relevancy of natural biological systems.

synthetic biology↗

Differentiation of Pluripotent Synthetic Minimal Cells via Genetic Circuits and Programmable Mating

Synthetic minimal cells, here defined as liposomal bioreactors synthesizing protein, are a recent technology that models the intricate gene and protein networks of live cells, without the noise inherent to natural systems. Here we show a toolset for engineering combinatorial genetic circuits in synthetic cells, where distinct populations of synthetic cells control single-gene components, and those populations are assembled via programmable fusion to construct complex biological pathways. We utilize this technology to demonstrate that progenitor populations can mimic differentiation into new lineages in response to small molecule stimuli or as an effect of \"mating\" with another synthetic cell population. This provides a practical tool for metabolic engineering and natural pathway study, as well as paving the way towards the construction of live synthetic cells with complex gene pathways and the ability to form distinct lineages.

synthetic biology↗