Search bioRxiv⌕ Search

Biology subjects

Heath-Heckman, E. A.

Publications and source records attributed to Heath-Heckman, E. A..

3 recordsLinked to original sources

Bacterial-driven development is mediated by Calcium-Dependent Intrinsic Apoptosis in the Squid-Vibrio Symbiosis

The presence of beneficial microbes serves as a post-embryonic developmental cue in a wide array of metazoan species. However, the mechanisms through which mutualistic bacteria induce developmental processes such as apoptosis are poorly understood. A leading model system utilized to study bacteria-induced developmental apoptosis is the Hawaiian bobtail squid, Euprymna scolopes, whose bacterial symbiont Vibrio fischeri induces several developmental events upon colonization of the squids light organ. Upon hatching the light organ possesses ciliated epithelial fields (CEFs) and appendages that facilitate the collection of V. fischeri from the ambient seawater for symbiont colonization of the internal crypt spaces. To better understand the molecular pathways underpinning bacterial-induced development occurring in these appendages, we isolated appendages from hatchling (0-1h) and aposymbiotic and symbiotic E. scolopes light organs (18h) for RNA sequencing. Our analysis of this transcriptomic dataset indicated that symbiotic appendages undergo intrinsic apoptosis in response to excessive cytosolic calcium. Further experiments found that symbiotic appendages exhibited increased cytosolic calcium and mitochondrial membrane potential overload relative to their aposymbiotic counterparts. In comparing our appendage specific gene expression to previously published whole light organ transcriptomic dataset, we identified increased presence of apoptosis inducing factor (AIF) and decreased expression of transcripts related to protein folding in the appendages as potential mechanisms of apoptotic signal specificity to the CEF. Together, these data suggest a central role of cytosolic calcium in the developmental apoptotic signaling induced by V. fischeri colonization of the E. scolopes light organ. ImportanceBacterial cues are known to induce post-embryonic animal development, but the mechanisms mediating crosstalk between bacterial product recognition and developmental dynamics require further study. Because of its binary nature and clear developmental phenotypes, the Euprymna scolopes- Vibrio fischeri system is an excellent model for symbiont-induced development. Here, we characterize the symbiont-induced apoptotic signaling that mediates the loss of V. fischeri recruitment structures in the E. scolopes light organ following colonization. Transcriptomic changes in colonized light organs and subsequent microscopy-based experiments support that acquisition of V. fischeri induces loss of the ciliated symbiont recruitment structures in juvenile light organs via intrinsic apoptotic signaling initiated by excess cytosolic calcium. This work advances our understanding of how mutualistic bacterial cues initiate signal transduction to induce developmental programming and may serve as a foundation upon which we can begin to disentangle the ways in which more diverse and complex microbial communities influence post-embryonic development.

developmental biology↗

Normal table of post-embryonic larval development for the California newt, Taricha torosa

We present here a normal table for post-embryonic development in the California newt (Taricha torosa), part of a genus of newts frequently studied for their toxicity and role within a predator-prey relationship. We generated the table by observing larvae collected as eggs in the wild and hatched and reared in the lab through metamorphosis. Building upon an established table consisting of 40 embryonic stages of development, our table consists of 13 stages based on discrete anatomical changes, primarily in limb development, and concludes at Stages 12-13 when the larvae undergo metamorphosis. We also describe more gradual phenotypic changes and their correlation to discrete stages in the developmental timeline. Finally, we illustrate the variability of the timing for reaching these stages in a controlled lab environment, demonstrating that time from hatching is not a reliable metric for standardizing results for diverse studies involving developing larvae. This staging table and accompanying observations will facilitate cross-study integration of research with larval T. torosa.

zoology↗

The Impact of Species Tree Estimation Error on Cophylogenetic Reconstruction

AO_SCPLOWBSTRACTC_SCPLOWJust as a phylogeny encodes the evolutionary relationships among a group of organisms, a cophylogeny represents the coevolutionary relationships among symbiotic partners. Both are widely used to investigate a range of topics in evolutionary biology and beyond. Both are also primarily reconstructed using computational analysis of biomolecular sequence data as well as other biological character data. The most widely used cophylogenetic reconstruction methods utilize an important simplifying assumption: species phylogenies for each set of coevolved taxa are required as input and assumed to be correct. Many theoretical and experimental studies have shown that this assumption is rarely - if ever - satisfied, and the consequences for cophylogenetic studies are poorly understood. To address this gap, we conduct a comprehensive performance study that quantifies the relationship between species tree estimation error and downstream cophylogenetic estimation accuracy. The study includes performance benchmarking using in silico model-based simulations. Our investigation also includes assessments of cophylogenetic reproducibility using genomic sequence datasets sampled from two important models of symbiosis: soil-associated fungi and their endosymbiotic bacteria, and bobtail squid and their bioluminescent bacterial symbionts. Our findings conclusively demonstrate the major impact that upstream phylogenetic estimation error has on downstream cophylogenetic reconstruction quality.

bioinformatics↗