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Harris, D. J.

Publications and source records attributed to Harris, D. J..

4 recordsLinked to original sources

Forecasting biodiversity in breeding birds using best practices

Biodiversity forecasts are important for conservation, management, and evaluating how well current models characterize natural systems. While the number of forecasts for biodiversity is increasing, there is little information available on how well these forecasts work. Most biodiversity forecasts are not evaluated to determine how well they predict future diversity, fail to account for uncertainty, and do not use time-series data that captures the actual dynamics being studied. We addressed these limitations by using best practices to explore our ability to forecast the species richness of breeding birds in North America. We used hindcasting to evaluate six different modeling approaches for predicting richness. Hindcasts for each method were evaluated annually for a decade at 1,237 sites distributed throughout the continental United States. All models explained more than 50% of the variance in richness, but none of them consistently outperformed a baseline model that predicted constant richness at each site. The best practices implemented in this study directly influenced the forecasts and evaluations. Stacked species distribution models and \"naive\" forecasts produced poor estimates of uncertainty and accounting for this resulted in these models dropping in the relative performance compared to other models. Accounting for observer effects improved model performance overall, but also changed the rank ordering of models because it did not improve the accuracy of the \"naive\" model. Considering the forecast horizon revealed that the prediction accuracy decreased across all models as the time horizon of the forecast increased. To facilitate the rapid improvement of biodiversity forecasts, we emphasize the value of specific best practices in making forecasts and evaluating forecasting methods.

ecology

Opportunities And Obstacles For Deep Learning In Biology And Medicine

Deep learning, which describes a class of machine learning algorithms, has recently showed impressive results across a variety of domains. Biology and medicine are data rich, but the data are complex and often ill-understood. Problems of this nature may be particularly well-suited to deep learning techniques. We examine applications of deep learning to a variety of biomedical problems--patient classification, fundamental biological processes, and treatment of patients--and discuss whether deep learning will transform these tasks or if the biomedical sphere poses unique challenges. We find that deep learning has yet to revolutionize or definitively resolve any of these problems, but promising advances have been made on the prior state of the art. Even when improvement over a previous baseline has been modest, we have seen signs that deep learning methods may speed or aid human investigation. More work is needed to address concerns related to interpretability and how to best model each problem. Furthermore, the limited amount of labeled data for training presents problems in some domains, as do legal and privacy constraints on work with sensitive health records. Nonetheless, we foresee deep learning powering changes at both bench and bedside with the potential to transform several areas of biology and medicine.

bioinformatics

Body Size Shifts Influence Effects Of Increasing Temperatures On Ectotherm Metabolism

INTRODUCTION INTRODUCTION METHODS RESULTS DATA ACCESSIBILITY BIOSKETCH REFERENCES Environmental temperature influences organisms in many ways; temperature increases or decreases rates of physiological processes (Brown et al., 2012), determines timing of reproduction (Olive, 1995), and even directly affects mortality (Pauly, 1980). Because of the far-reaching influence of temperature, projected increases in global temperatures due to climate change are expected to substantially alter diverse species characteristics. Increased temperatures have already been implicated in shifts in species geographic distributions (e.g., Buckley et al., 2010), and in the phenology of species life history and development (e.g., Wolkovich ...

ecology

Bees Without Flowers: Before Peak Bloom, Diverse Native Bees Visit Insect-produced Honeydew Sugars

Bee foragers respond to complex visual, olfactory, and extrasensory cues to optimize searches for floral rewards. Their abilities to detect and distinguish floral colors, shapes, volatiles, and ultraviolet signals, and even gauge nectar availability from changes in floral humidity or electric fields are well studied. Bee foraging behaviors in the absence of floral cues, however, are rarely considered. We observed forty-four species of wild bees visiting inconspicuous, non-flowering shrubs during early spring in a protected, Mediterranean habitat. We determined experimentally that these bees were accessing sugary honeydew secretions from scale insects without the aid of standard cues. While honeydew use is known among some social Hymenoptera, its use across a diverse community of mostly solitary bees is a novel observation. The widespread ability of native bees to locate and use unadvertised, non-floral sugars suggests unappreciated sensory mechanisms and/or the existence of a social foraging network among solitary bees that may influence how native bee communities cope with increasing environmental change.

ecology