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Biology subjects

Hantula, J.

Publications and source records attributed to Hantula, J..

2 recordsLinked to original sources

Rot or not? Uncovering the spatial patterns and drivers of Norway spruce root rot with harvester data

Root rot is a major problem for forestry, leading to reduced timber quality, growth losses, and increased disturbance risks. Harvester data provides a promising source of information for improving the knowledge on the root rot distribution. Here, we used harvester data (1) to map the risk of spruce root rot in southern and central Finland, and (2) to understand the drivers of the spatial patterns in rot occurrence. First, we built a statistical model predicting the percentage of stems affected by root rot on stand-level. To train the model, we used an extensive set of harvester data, containing 10,402 clear-cut forest stands, where the presence of root rot was recorded for each cut tree using an algorithm based on bucking patterns (i.e., cutting of the stem into different log assortments) recorded by the harvester. The model consisted of two parts, a fixed component describing the effects of different drivers of root rot, and a spatial random component describing the spatial patterns not explained by the fixed part of the model. The fixed part included forest and site attributes, landscape characteristics and proxies of forest-use legacies. The model was then used to map root rot risk, by predicting the probability of root rot occurrence using spatial data sets of the variables in the fixed part of the model, and the known rot status of locations in the data set for the random part of the model. Finally, the map was tested with an independent validation data, verifying its ability to identify the high-risk areas. Proxies of forest-use legacies, tree size and site fertility were found to drive the percentage of rot-affected stems in stands. The results quantify the root rot risk in Finland in higher detail than before and demonstrate the large potential of harvester data in informing about the risk of root rot in boreal forests.

ecology↗

Diversity and impact of single-stranded RNA viruses in Czech Heterobasidion populations

Heterobasidion annosum sensu lato comprises some of the most devastating conifer pathogens conifers. Exploring virocontrol as a potential strategy to mitigate economic losses caused by these fungi holds promise for the future. In this study, we conducted a comprehensive screening for viruses in a 98 H. annosum s.l. specimens from different regions of Czechia aiming to identify viruses inducing hypovirulence. Initial examination for dsRNA presence was followed by RNA-Seq analyses using pooled RNA libraries constructed from H. annosum and Heterobasidion parviporum, with diverse bioinformatic pipelines employed for virus discovery. Our study uncovered 25 distinct ssRNA viruses, including two ourmia-like viruses, one mitovirus, one fusarivirus, one tobamo-like virus, one cogu-like virus, one bisegmented narna-like virus and one segment of another narna-like virus, and 17 ambi-like viruses, for which hairpin and hammerhead ribozymes were detected. Coinfections of up to 10 viruses were observed in six Heterobasidion isolates, while another six harbored a single virus. 73% of the isolates analyzed by RNA-Seq were virus-free. These findings show that the virome of Heterobasidion populations in Czechia is highly diverse and differs from that in the boreal region. We further investigated the host effects of certain identified viruses through comparisons of the mycelial growth rate and proteomic analyses and found that certain tested viruses caused growth reductions of up to 22% and significant alterations in the host proteome profile. Their intraspecific transmission rates ranged from 0% to 33%. Further studies are needed to fully understand the biocontrol potential of these viruses in planta. ImportanceO_LIFirst report of a fusarivirus, a tobamo- and a cogu-like virus in Heterobasidion C_LIO_LICertain viruses caused mycelial growth reduction in H. annosum host strains C_LIO_LIViral infections lead to proteome changes in Heterobasidion C_LI

microbiology↗