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Biology subjects

Hansen, M. F.

Publications and source records attributed to Hansen, M. F..

2 recordsLinked to original sources

Fundamentals of biofilm formation in soil: From functionalized self-assembled monolayers to rewilding

Surface energy and surface charges play crucial roles in bacterial adhesion and biofilm formation, however the mechanisms underlying the bacteria-surface interaction, particularly on the formation of soil biofilms, remain unclear. In spite of considering the spatiotemporal dynamics of biofilm formation on different soil surfaces, we compared the impact of four different substrates on bacterial attachment and biofilm formation. The substrates were constituted of gold layer covered by NH2+, CH3, COO- and OH-terminated self-assembled monolayers (SAMS). Two soil habitat bacteria with different Gram barriers, Bacillus subtilis and Acinetobacter baylyi, were grown with incubation times of 6-72 h on each type of surfaces. Bacterial attachment and biofilm formation was assessed using metabolic activity of the cells adhered to the surfaces. The spatial distribution of adhere bacteria was visualized by scanning electron microscopy and confocal laser scanning microscopy. We also investigated whether the surface impacts the biofilm matrix composition. A general view of our results suggests a major influence of the surface chemistry on bacterial potential to form biofilms. The hydrophobic or positively charged substrates attract bacteria while a lack of attachment and biofilm formation on hydrophilic and negatively charged surfaces. This work points out the potential of surface treatments in the environment where it is intended to either repel or attract bacteria.

microbiology↗

Alanine cross-feeding determines Escherichia coli colony growth dynamics

Bacteria commonly live in spatially structured biofilm assemblages, which are encased by an extracellular matrix. Metabolic activity of the cells inside biofilms causes gradients in local environmental conditions, which leads to the emergence of physiologically differentiated subpopulations. Information about the properties and spatial arrangement of such metabolic subpopulations, as well as their interaction strength and interaction length scales are lacking, even for model systems like Escherichia coli colony biofilms grown on agar-solidified media. Here, we use an unbiased approach, based on temporal and spatial transcriptome and metabolome data acquired during E. coli colony biofilm growth, to study the spatial organization of metabolism. We discovered that alanine displays a unique pattern among amino acids and that alanine metabolism is spatially and temporally heterogeneous. At the anoxic base of the colony, where carbon and nitrogen sources are abundant, cells secrete alanine via the transporter AlaE. In contrast, cells utilize alanine as a carbon and nitrogen source in the oxic nutrient-deprived region at the colony mid-height, via the enzymes DadA and DadX. This spatially structured alanine cross-feeding influences cellular viability and growth in the cross-feeding-dependent region, which shapes the overall colony morphology. More generally, our results on this precisely controllable biofilm model system demonstrate a remarkable spatiotemporal complexity of metabolism in biofilms. A better characterization of the spatiotemporal metabolic heterogeneities and dependencies is essential for understanding the physiology, architecture, and function of biofilms.

microbiology↗