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Hannig, J.

Publications and source records attributed to Hannig, J..

2 recordsLinked to original sources

Stochastic modeling of the dynamics of Salmonella infection of epithelial cells

Bacteria of the Salmonella genus are intracellular pathogens, which cause gastroenteritis and typhoid fever in animals and humans, and are responsible for millions of infections and thousands of deaths across the world every year. Furthermore, Salmonella has played the role of a model organism for studying host-pathogen interactions. Taking these two aspects into account, enormous efforts in the literature are devoted to study this intracellular pathogen. Within epithelial cells, there are two distinct subpopulations of Salmonella: (i) a large fraction of Salmonella, which are enclosed by vacuoles, and (ii) a small fraction of hyper-replicating cytosolic Salmonella. Here, by considering the infection of epithelial cells by Salmonella as a discrete-state, continuous-time Markov process, we propose a stochastic model of infection, which includes the invasion of Salmonella into the epithelial cells by a cooperative strategy, the replication inside the Salmonella-containing vacuole, and the bacterial proliferation in the cytosol. The xenophagic degradation of cytosolic bacteria is considered, too. The stochastic approach provides important insights into stochastic variation and heterogeneity of the vacuolar and cytosolic Salmonella populations on a single-cell level over time. Specifically, we predict the percentage of infected human epithelial cells depending on the incubation time and the multiplicity of infection, an d the bacterial load of the infected cells at different post-infection times.

systems biology↗

Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways using Petri nets

The paper describes a mathematical model of the molecular switch of cell survival, apoptosis, and necroptosis in cellular signaling pathways initiated by tumor necrosis factor 1. Based on experimental findings in the current literature, we constructed a Petri net model in terms of detailed molecular reactions for the molecular players, protein complexes, post-translational modifications, and cross talk. The model comprises 118 biochemical entities, 130 reactions, and 299 connecting edges. Applying Petri net analysis techniques, we found 279 pathways describing complete signal flows from receptor activation to cellular response, representing the combinatorial diversity of functional pathways.120 pathways steered the cell to survival, whereas 58 and 35 pathways led to apoptosis and necroptosis, respectively. For 65 pathways, the triggered response was not deterministic, leading to multiple possible outcomes. Based on the Petri net, we investigated the detailed in silico knockout behavior and identified important checkpoints of the TNFR1 signaling pathway in terms of ubiquitination within complex I and the gene expression dependent on NF-{kappa}B, which controls the caspase activity in complex II and apoptosis induction.

systems biology↗