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Gruen, S.

Publications and source records attributed to Gruen, S..

2 recordsLinked to original sources

UnitRefine: A Community Toolbox for Automated Spike Sorting Curation

High-density electrophysiology simultaneously captures the activity from hundreds of neurons, but isolating single-unit activity still relies on slow and subjective manual curation. As datasets keep increasing, this poses a major bottleneck in the field. We therefore developed UnitRefine, a classification toolbox that automates curation by training various machine-learning models directly on human expert annotations. Fully integrated in the SpikeInterface ecosystem, UnitRefine combines established and novel quality metrics, cascading classification and comprehensive hyperparameter search to provide optimized models for different applications. UnitRefine achieves human-level performance across diverse datasets, spanning species, probe types, and laboratories, including recordings from mice, rats, mole rats, primates, and human patients. Applied to a large brain-wide dataset, UnitRefine doubled single unit yield and improved behavioral decoding performance. A streamlined graphical interface allows models to be fine-tuned to new datasets and shared via the Hugging Face Hub, enabling broad adoption and community-driven improvement of automated curation workflows.

neuroscience↗

Behavioral context determines network state and variability dynamics in monkey motor cortex

Variability of spiking activity is ubiquitous throughout the brain but little is known about its contextual dependence. Trial-to-trial spike count variability, estimated by the Fano Factor (FF), and within-trial spike time irregularity, quantified by the local coefficient of variation (CV2), reflect variability on long and short time scales, respectively. We co-analyzed FF and CV2 in monkey motor cortex comparing two behavioral contexts, movement preparation (wait) and execution (movement). We find that FF significantly decreases from wait to movement, while CV2 increases. The more regular firing (low CV2) during wait is related to an increased power of local field potential beta oscillations and phase locking of spikes to these oscillations. In renewal processes, a widely used model for spiking activity under stationary input conditions, both measures are related as FF{approx}CV2. This expectation was met during movement, but not during wait where FF>>CV22. We conclude that during movement preparation, ongoing brain processes result in changing network states and thus in high trial-to-trial variability (high FF). During movement execution, the network is recruited for performing the stereotyped motor task, resulting in reliable single neuron output. We discuss our results in the light of recent computational models that generate non-stationary network conditions.

neuroscience↗