Biology subjects

Griffith, O. W.

Publications and source records attributed to Griffith, O. W..

7 recordsLinked to original sources

bioRxiv2025

DNA methylation reprogramming in marsupial embryos is restricted to the extraembryonic lineage

DNA methylation (5mC) is an epigenetic mark that plays a critical role in defining cell fate. Following fertilisation, DNA methylation inherited from gametes must be reprogrammed to establish totipotency and enable the parental-to-zygotic transition. To accomplish this, non-mammalian vertebrates such as zebrafish and medaka subtly reprogram maternal 5mC profiles while maintaining high methylation levels throughout embryogenesis. In contrast, eutherian mammals such as mouse and human undergo global 5mC erasure in both embryonic and extraembryonic lineages. However, while embryonic 5mC is rapidly re-established to high levels upon implantation, the trophectoderm, which gives rise to the placenta, displays sustained and conserved DNA hypomethylation, suggesting that this drastic 5mC erasure may be functionally linked to complex placentation in mammals. To clarify whether extensive post-fertilisation 5mC erasure co-evolved with placentation, we explored embryonic methylation dynamics in marsupials, a lineage of therian mammals with a short-lived placenta. We produced a near complete telomere-to-telomere (T2T) genome and generated detailed epigenome maps of embryonic development for an Australian marsupial, the fat-tailed dunnart (Sminthopsis crassicaudata). We found the dunnart embryo exhibits genome wide DNA demethylation at the blastocyst stage, but these changes occur in the trophectoderm only, suggesting that 5mC erasure in the placenta is an ancestral state in therian mammals. Furthermore, the T2T-level dunnart genome assembly enabled identification of sex chromosomes, uncovering extensive hypomethylation of the paternally-inherited inactive X chromosome in females and revealing the previously unannotated master regulator of X chromosome inactivation, lncRNA Rsx. Our data indicate that while the use of genome-wide 5mC erasure differs between eutherian and marsupial lineages, 5mC erasure in extraembryonic tissue is ancestral to therian mammals and may be necessary to support placental development. HIGHLIGHTSO_LIFirst embryonic DNA methylation maps in an Australian marsupial C_LIO_LIExtensive global erasure of DNA methylation in the trophectoderm C_LIO_LIMaintenance of high DNA methylation in the embryonic lineage C_LIO_LIHypomethylated paternal X chromosome with methylated escapee genes C_LI

developmental biology↗

bioRxiv2025

Fetal inflammatory signals regulate maternal investment in a pregnant marsupial

Marsupial pregnancy is strikingly short: placental attachment in the gray short-tailed opossum Monodelphis domestica lasts only two days. This brevity has been attributed to a maternal immune response to fetal contact which only eutherian mammals have evolved mechanisms to tolerate. The attachment period is characterized by a spike in inflammatory signaling, development of an expanded uterine capillary network, and exponential fetal growth. Several inflammatory cytokines, including interleukin-1A (IL-1A) and interleukin-6 (IL-6), are produced primarily by fetal cells. We hypothesized that placental cytokines function as solicitation signals that increase maternal investment. To test this, we treated pregnant opossums with inhibitors of IL-1 and IL-6 during the rapid growth phase. Inhibition of IL-1 and IL-6 signaling significantly increased average biomass per fetus (+12% and +10%), and as such these signals impose costs, rather than direct benefits, to intrauterine growth. However, uninhibited controls showed greater surviving litter sizes than IL-1-inhibited animals, suggesting that IL-1A promotes offspring survival. Single-cell transcriptomes reveal that maternal vascular endothelial cells, perivascular cells, and fibroblasts are the primary targets of fetal IL-1A, and maternal cells simultaneously upregulate antagonists IL1R2 and IL1RN, suggesting resistance to fetal signaling. Placental transcriptomics reveals that the cytokine surge is restricted to the final day of pregnancy when placental cells fuse to form syncytial knots, and that these cells produce additional vasomodulatory signals including a truncated isoform of VEGFA. Maternal cells, in contrast, increase production of functional antagonists IL1R2 and IL1RN, suggesting resistance to fetal signals. We propose that marsupials co-opted inflammatory signals to perform a novel function promoting fetal survival through maternal vascular remodeling.

evolutionary biology↗

bioRxiv2024

Before the brink: sublethal impacts of climate change on stingless bee flight performance

AimWe aimed to understand the sublethal impacts of climate change on native bee ecology. We evaluated how flight performance, a key trait for predator escape, dispersal, and pollination, is impacted by temperature. We aimed to understand how species geographic ranges shape species thermal performance curves (TPCs) and determine species vulnerability to further warming. LocationAustralia Time periodPresent Major taxa studiedStingless bees MethodsWe tested the flight speed and acceleration of two species of stingless bees, Austroplebeia australis and Tetragonula carbonaria at seven test temperatures. We examined how the climate experienced by species throughout their ranges shapes their TPCs. Inferences were made on how sublethal increases in temperature will likely impact key ecological activities associated with flight by estimating the proportion of species geographic ranges that experience temperatures that exceed their thermal optima. ResultsSpecies TPCs reflected the thermal environments they inhabit. A. australis, which experiences greater thermal variation and hotter temperatures throughout their range, had a broader TPC and higher thermal optima. However, A. australis also had faster flight performance than T. carbonaria, rejecting the jack-of-all-trades master-of-none hypothesis. Further increases in temperature will reduce flight performance of T. carbonaria at a faster rate (due to their narrower TPCs) than A. australis, however, a larger proportion of the A. australis range is currently exposed to temperatures above their thermal optima. Main conclusionsClimates will impact species ecology before they reach their lethal limits. Our study supports the idea that species fundamental niche breadths are linked to their geographic ranges, but that trade-offs are not associated with flight performance and ability to perform across a broad range of temperatures. When assessing vulnerability to climate change, it is important to consider how temperature impacts species traits, but also the climates that species experience throughout their unique geographic ranges.

physiology↗

bioRxiv2023

The extension of mammalian pregnancy required taming inflammation; independent evolution of extended placentation in the tammar wallaby

In the first live bearing mammals, it is assumed that pregnancy was short and ended with a brief period of inflammatory maternal-fetal interaction. This mode of reproduction has been retained in many marsupials. While inflammation is key to successful implantation in eutherians, a key innovation in eutherians is the ability to switch off this inflammation after it has been initiated. This extended period, in which inflammation is suppressed, likely allowed for an extended period of placentation. One lineage of marsupials, the macropodids (wallabies and kangaroos), have extended placentation beyond the 2-4 days seen in other marsupial taxa, which allows us to test whether a moderated inflammation response after attachment is a general pattern associated with the extension of placentation in mammals. We show that during tammar wallaby pregnancy, some inflammatory genes are expressed at key time points of gestation, including IL6, before attachment, IL12A and LIF throughout the period of placentation and prostaglandins before birth. However, we did not see evidence of a complete inflammatory response at any time point. We argue that genes involved in a moderated inflammation reaction may have been co-opted into roles for placentation, facilitating the establishment and maintenance of extended fetal-maternal contact. Whilst the absence of other key mediators of inflammation may prevent prolonged damage to the uterus. We argue the moderation of inflammation following maternal-fetal contact is a convergently evolved key innovation that allowed for the extension of placentation in different mammalian lineages. Significance statementOur data suggest that moderation of the inflammatory reaction to embryo attachment allows for extension of pregnancy in mammals. The ancestor of all mammals likely experienced an ancestral inflammatory reaction in response to embryo attachment. In contrast, eutherians and some marsupials, such as macropodids, have an extended period of fetal-maternal contact. During this period of placentation many inflammatory genes are silenced while a few others are still expressed. This moderated expression of inflammatory genes suggests that some genes of inflammation were coopted into establishing and maintaining the placenta. This challenges the perspective of inflammation as being detrimental to pregnancy, instead suggesting that fetal-maternal interactions are based on a modified inflammation response necessary for maintaining pregnancy over an extensive period of time.

evolutionary biology↗

bioRxiv2020

Soybean Yellow Stripe-like7 is a symbiosome membrane peptide transporter essential for nitrogen fixation

Legumes form a symbiosis with rhizobia that convert atmospheric nitrogen (N2) to ammonia which they provide to the plant in return for a carbon and nutrient supply. Nodules, developed as part of the symbiosis, harbor rhizobia which are enclosed in the plant-derived symbiosome membrane (SM), to form a symbiosome. In the mature nodule all exchanges between the symbionts occur across the SM. Here we characterize GmYSL7, a member of Yellow stripe-like family which is localized to the SM in soybean nodules. It is expressed specifically in nodule infected cells with expression peaking soon after nitrogenase becomes active. Although most members of the family transport metal complexed with phytosiderophores, GmYSL7 does not. It transports oligopeptides of between four and 12 amino acids. Silencing of GmYSL7 reduces nitrogenase activity and blocks development when symbiosomes contain a single bacteroid. RNAseq of nodules in which GmYSL7 is silenced suggests that the plant initiates a defense response against the rhizobia. There is some evidence that metal transport in the nodules is dysregulated, with upregulation of genes encoding ferritin and vacuolar iron transporter family and downregulation of a gene encoding nicotianamine synthase. However, it is not clear whether the changes are a result of the reduction of nitrogen fixation and the requirement to store excess iron or an indication of a role of GmYSL7 in regulation of metal transport in the nodules. Further work to identify the physiological substrate for GmYSL7 will allow clarification of this role. One sentence summaryGmYSL7 is a symbiosome membrane peptide transporter that is essential for symbiotic nitrogen fixation that when silenced blocks symbiosome development.

plant biology↗

bioRxiv2018

Evolution of embryo implantation was enabled by the origin of decidual cells in eutherian mammals

Embryo implantation is the first step in the establishment of pregnancy in eutherian (Placental) mammals. Although viviparity evolved prior to the common ancestor of marsupials and eutherian mammals (therian ancestor), implantation is unique to eutherians. The ancestral therian pregnancy likely involved a short phase of attachment between the fetal and maternal tissues followed by parturition rather than implantation, similar to the mode of pregnancy found in marsupials such as the opossum. Embryo implantation in eutherian mammals as well as embryo attachment in opossum, induce a homologous inflammatory response in the uterus. Here, we elucidate the evolutionary mechanism by which the ancestral inflammatory fetal-maternal attachment was transformed into the process of implantation. We performed a comparative transcriptomic and immunohistochemical study of the gravid and non-gravid uteri of two eutherian mammals, armadillo (Dasypus novemcinctus) and hyrax (Procavia capensis); a marsupial outgroup, opossum (Monodelphis domestica); and compared it to previously published data on rabbit (Oryctolagus cuniculus). This taxon sampling allows inference of the eutherian ancestral state. Our results show that in the eutherian lineage, the ancestral inflammatory response was domesticated by suppressing a detrimental component viz. signaling by the cytokine IL17A, while retaining components that are beneficial to placentation, viz. angiogenesis, vascular permeability, remodeling of extracellular matrix. IL17A mediates recruitment of neutrophils to inflamed mucosal tissues, which, if unchecked, can damage the uterus as well as the embryo and lead to expulsion of the fetus. We hypothesized that the uterine decidual stromal cells, which evolved coincidentally with embryo implantation, evolved, in part, to prevent IL17A-mediated neutrophil infiltration. We tested a prediction of this hypothesis in vitro, and showed that decidual stromal cells can suppress differentiation of human naive T cells into IL17A-producing Th17 cells. Together, these results provide a mechanistic understanding of early stages of the evolution of the eutherian mode of pregnancy, and also identify a potentially ancestral function of an evolutionary novelty, the decidual stromal cell-type.

evolutionary biology↗

bioRxiv2018

The mammalian decidual cell evolved from a cellular stress response

Among animal species, cell types vary greatly in terms of number and kind. The broad range of number of cell types among species suggests that cell type origination is a significant source of evolutionary novelty. The molecular mechanisms giving rise to novel cell types, however, are poorly understood. Here we show that a novel cell type of eutherian mammals, the decidual stromal cell (DSC), evolved by rewiring an ancestral cellular stress response. We isolated the precursor cell type of DSCs, endometrial stromal fibroblasts (ESFs), from the opossum Monodelphis domestica. We show that, in opossum ESF, the majority of decidual core regulatory genes respond to decidualizing signals, but do not regulate decidual effector genes. Rather, in opossum ESF, decidual transcription factors function in apoptotic and oxidative stress response. We propose that the rewiring of cellular stress responses could be a general mechanism for the evolution of novel cell types.

evolutionary biology↗