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Biology subjects

Greene, M. A.

Publications and source records attributed to Greene, M. A..

2 recordsLinked to original sources

Host and Microbe Scale Processes Shape Spatial Variation in Aphaenogaster (Hymenoptera: Formicidae) Genetics and Their Microbiota

Like all ecological communities, host-associated (HA) microbiota are shaped by environmental selection and dispersal limitation. However, unlike communities of free-living organisms, communities of HA microbes experience selection and dispersal at two separate scales - the scale of the microbes and the scale of their hosts. Thus, HA microbes must tolerate not only the environment created by their host (microbe-scale environment), but also, the environment in which their host resides (host-scale environment). Likewise, HA microbes can disperse between hosts through either horizontal or vertical transmission (microbe-scale dispersal) but can also disperse between locations through host movement (host-scale dispersal). In this paper, we examine how multiscale environmental selection and dispersal limitation shape the genetics and HA microbiota of ants in the Aphaenogaster fulva-rudis-texana (Hymenoptera: Formicidae) complex. We begin by showing how spatial variation in Aphaenogaster genetics is shaped by host-scale environmental selection and dispersal limitation. We then show how this allows both host- and microbe-scale environmental selection to govern spatial variation in Aphaenogaster microbiota. Finally, we discuss the possibility that microbe-scale dispersal limitation also impacts spatial variation in Aphaenogaster microbiota and that this, in turn, may contribute to spatial variation in Aphaenogaster genetics. Ultimately, our results help to shed light on the myriad of interacting factors governing spatial variation in HA microbiota, including the potential for complex, bidirectional interactions between host- and microbe-scale processes.

ecology↗

Modular vector assembly enables rapid assessment of emerging CRISPR technologies

The diversity of CRISPR systems, coupled with scientific ingenuity, has led to an explosion of applications; however, to test newly-described innovations in their model systems, researchers typically embark on cumbersome, one-off cloning projects to generate custom reagents that are optimized for their biological questions. Here, we leverage Golden Gate cloning to create the Fragmid toolkit, a modular set of CRISPR cassettes and delivery technologies, along with a web portal, resulting in a combinatorial platform that enables scalable vector assembly within days. We further demonstrate that multiple CRISPR technologies can be assessed in parallel in a pooled screening format using this resource, enabling the rapid optimization of both novel technologies and cellular models. These results establish Fragmid as a robust system for the rapid design of CRISPR vectors, and we anticipate that this assembly approach will be broadly useful for systematic development, comparison, and dissemination of CRISPR technologies.

genomics↗