Biology subjects

Grandcolas, P.

Publications and source records attributed to Grandcolas, P..

3 recordsLinked to original sources

bioRxiv2019

On islands, evolutionary but not functional originality is rare

Functionally and evolutionary original species are those whose traits or evolutionary history are shared by few others in a given set. These original species promote ecosystem multifunctionality, the ability to cope with an uncertain future, future benefits to society and therefore have a high conservation value. A potential signal of their extinction risks is their rarity (stating for geographic range-restriction in this study). On islands, life in isolation conducted to the rise of a multitude of original forms and functions as well as to high rates of endemism. Not only patterns and processes of insular originality are unexplained but the relationship between originality and rarity is still unknown. The aim of this study is to assess how original insular species are, to explore whether original species are rare or not and to investigate the factors that may explain the rarity of original species. We first compared the functional and evolutionary originality of monocotyledon species and whether continental or insular species were more original. We found that species restricted to islands were more original than continental species and, although functionally and evolutionary original species were dissimilar, many occurred on similar territories so that regional conservation strategies may allow to conserve these distinct forms. Yet, evolutionary original species were significantly more range-restricted than those which were distinct in their traits. Reflecting their rarity, evolutionary original species had low dispersal abilities and were found on islands where settlement may have been facilitated. On the opposite, functionally original species could reach a wider set of islands by being transported on long-distances. While some mechanisms may both explain rarity and originality such as extinctions, others may be specific to each of these biodiversity facets, in particular diversification, niche shift and expansion, and dispersal power. Implications for conservation are huge: original species are range-restricted and mostly found in the most threatened systems of the world, i.e. islands, endangering the reservoir of features against an uncertain future.

ecology↗

bioRxiv2019

Tracking the origin of island diversity: insights from divergence with the continental pool in monocots

At their early age, a large proportion of island pools were a partial sampling of mainland pools whatever islands are oceanic or fragments of the mainland. Through time, colonization, diversification, extinctions, have deeply transformed insular and continental communities and therefore the degree to which they share species. We studied the relative importance of these mechanisms by looking at the shared evolutionary history between species pools on islands and continents. Indeed, most of these mechanisms are not neutral regarding phylogeny but are linked to species evolutionary relationships. We measured the phylogenetic divergence between continental and insular monocot communities through metrics of beta Mean Pairwise Distance and beta Mean Nearest Taxon Distance. We first tested the influence of spatial and environmental distance to the continent, two main factors of divergence, but whose explanatory power in a phylogenetic context was still unclear. We showed that both dispersal and enviromental filtering were important to explain divergence, although species that could pass these filters were not phylogenetically clustered. There was however a clear distinction between oceanic and continental islands: a stable climate in the latters was key to the survival of the original biota leading to a high proportion of shared lineages between the mainland and islands. But distance to the continent was only part of the story, we investigated additionnal mechanisms of phylogenetic divergence through their relation to island features and community structure. This showed that the most divergent islands occurred in the tropics and that processes of persistence of original species, diversification in remote archipelagos, neutral colonization on easy-to-reach islands, turnover, and high speciation rates may have driven phylogenetic divergence at a world scale. This study showed how phylogenetic approaches may explain how divergence, or similarity may have arisen and provide new insights in the continental origin of plant diversity on islands.

ecology↗

bioRxiv2019

Phylogenetic synecdoche demonstrates optimality of subsampling and improves recovery of the Blaberoidea phylogeny

Phylogenomics seeks to use next-generation data to robustly infer an organisms evolutionary history. Yet, the practical caveats of phylogenomics motivates investigation of improved efficiency, particularly when quality of phylogenies are questionable. To achieve improvements, one goal is to maintain or enhance the quality of phylogenetic inference while severely reducing dataset size. We approach this goal by designing an optimized subsample of data with an experimental design whose results are determined on the basis of phylogenetic synecdoche - a comparison of phylogenies inferred from a subsample to phylogenies inferred from the entire dataset. We examine locus mutation rate, saturation, evolutionary divergence, rate heterogeneity, selection, and a priori information content as traits that may determine optimality. Our controlled experimental design is based on 265 loci for 102 blaberoidean cockroaches and 22 outgroup species. High phylogenetic utility is demonstrated by loci with high mutation rate, low saturation, low sequence distance, low rate heterogeneity, and low selection. We found that some phylogenetic information content estimators may not be meaningful for assessing information content a priori. We use these findings to design concatenated datasets with an optimized subsample of 100 loci. The tree inferred from the optimized subsample alignment was largely identical to that inferred from all 265 loci but with less evidence of long branch attraction and improved statistical support. In sum, optimized subsampling can improve tree quality while reducing data collection costs and yielding 4-6x improvements to computation time in tree inference and bootstrapping.

evolutionary biology↗