Biology subjects

Gourrier, A.

Publications and source records attributed to Gourrier, A..

3 recordsLinked to original sources

bioRxiv2025

Cellular porosity in dentin exhibits complex network characteristics with spatio-temporal fluctuations

According to the current hydrodynamic theory, teeth sensitivity is mediated by odontoblast cell processes which can be activated by fluid flow in the pericellular space of bulk dentin. To better understand the possible spatial extent of such phenomena, we investigated the topology and connectivity of dentinal porosity of a healthy human tooth. Using confocal fluorescence microscopy, we modeled the porosity as a spatial graph with edges representing dentinal tubules or lateral branches and nodes defining their connections. A large fraction of porosity channels in crown dentin was found to be interconnected, with 47 % of nodes linked in a single component over a millimetric distance from the dentin-enamel junction (DEJ). However, significant differences in network topology were also observed. A sharp transition in connectivity from 83 % to 43 % occurred at 300 {micro}m from the DEJ, which corresponds to an early stage of tooth formation. This was reflected in all graph metrics investigated, in particular the network resilience which dropped by a factor 2. To test the robustness of our observations, an in-depth analysis of potential remaining biases of the graph extraction was conducted. Most graph metrics considered were found to be within a 10 % precision range from a manually annotated ground truth. However, path metrics, which characterize transport properties, proved very sensitive to network defects. Residual errors were classified in 4 topological classes related to fluorescence staining and confocal detection efficiency, instrumental resolution and image processing. Their relative importance was estimated using statistical and physical graph attack simulations in a broad experimental range. Our modeling thus provides a practical framework to estimate the interpretability of calculated graph metrics for a given experimental microscopy setup and image processing pipeline. Overall, this study shows that dentin porosity exhibits typical characteristics of a complex network and quantitatively emphasize the importance of the smallest lateral branches. Our results could be used to model fluid flow more accurately in order to better understand mechanosensing by odontoblasts in dentin.

biophysics↗

bioRxiv2022

The elasto-plastic nano- and microscale compressive behaviour of rehydrated mineralised collagen fibres

The multiscale architectural design of bio-based nanostructured materials such as bone enables them to combine unique structure-mechanical properties that surpass classical engineering materials. In biological tissues, water as one of the main components plays an important role in the mechanical interplay, but its influence has not been quantified at the length scale of a mineralised collagen fibre. Here, we combine in situ experiments and a statistical constitutive model to identify the elasto-plastic micro- and nanomechanical fibre behaviour under rehydrated conditions. Micropillar compression and simultaneous synchrotron small angle X-ray scattering (SAXS) and X-ray diffraction (XRD) were used to quantify the interplay between fibre, mineralised collagen fibrils and mineral nanocrystals. Rehydration led to a 65% to 75% decrease of fibre yield stress and compressive strength, and a 70% decrease of stiffness with a 3x higher effect on stress than strain values. While in good agreement with bone extracellular matrix, the decrease is 1.5-3x higher compared to micro-indentation and macro-compression. Hydration has a higher influence on mineral than fibril strain while the highest difference to the macroscale was observed comparing mineral and tissue levels. Results suggest that the effect of hydration is strongly mediated by ultrastructural interfaces while corroborating the previously reported water-mediated structuring of bone apatite providing insights towards the mechanical consequences. Results show that the missing reinforcing capacity of surrounding tissue is more pronounced in wet than dry conditions when testing an excised array of fibrils, mainly related to the swelling of fibrils in the matrix. Differences leading to higher compressive strength between mineralised tissues do not seem to depend on the rehydration state while fibril mobilisation follows a similar regime in wet and dry conditions. The lack of kink bands point towards the role of water as an elastic embedding, thus, adapting the way energy is absorbed. Statement of significanceCharacterising structure-property-function relationships of biomaterials helps us to elucidate the underlying mechanisms that enables the unique properties of these architectured materials. Experimental and computational methods can advance our understanding towards their complex behaviour providing invaluable insights towards bio-inspired material development. In our study, we present a novel method for biomaterials characterisation. We close a gap of knowledge at the micro- and nanometre length scale by combining synchrotron experiments and a statistical model to describe the behaviour of a rehydrated single mineralised collagen fibre. Results suggest a high influence of hydration on structural interfaces, and the role of water as an elastic embedding. Using a statistical model, we are able to deduce the differences in wet and dry elasto-plastic properties of fibrils and fibres close to their natural hydration state.

bioengineering↗

bioRxiv2020

Human bone mesoscale 3D structure revisited by plasma focused ion beam serial sectioning

Visualizing bone mineralization and collagen microfibril organization at intermediate scales between the nanometer and the 100s of microns range, the mesoscale, is still an important challenge. Similarly, visualizing cellular components which locally affect the tissue structure requires a precision of a few tens of nanometers at maximum while spanning several tens of micrometers. To address this issue, we employed a plasma focused ion beam (PFIB) equipped with a scanning electron microscope (SEM) to sequentially section nanometer-scale layers of demineralized and mineralized human femoral lamellar bone over volumes of approximately 46 x 40 x 9 m3, and 29 x 26 x 9 m3, respectively. This large scale view retained high enough resolution to visualize the collagen microfibrils while partly visualizing the lacuno-canalicular network (LCN) in three-dimensions (3D). We showed that serial sectioning can be performed on mineralized sections, and does not require demineralization. Moreover, this method revealed ellipsoidal mineral clusters, noted by others in high resolution studies, as a ubiquitous motif in lamellar bone over tens of microns, suggesting a heterogeneous and yet regular pattern of mineral deposition past the single collagen fibril level. These findings are strong evidence for the need to revisit bone mineralization over multi-length scales. Graphical Abstract O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=94 SRC="FIGDIR/small/180729v2_ufig1.gif" ALT="Figure 1"> View larger version (41K): org.highwire.dtl.DTLVardef@1fe58a0org.highwire.dtl.DTLVardef@16c726corg.highwire.dtl.DTLVardef@cc28c6org.highwire.dtl.DTLVardef@1891d1f_HPS_FORMAT_FIGEXP M_FIG C_FIG

bioengineering↗