Search bioRxiv⌕ Search

Biology subjects

Goodyear, L. E. B.

Publications and source records attributed to Goodyear, L. E. B..

3 recordsLinked to original sources

'Occam's bias' undermines inferences from phylogenetic linear models

Phylogenetic modelling has consolidated as the analytical standard to address hypotheses about the patterns and dynamics of biodiversity in inter-specific contexts. These analyses are traditionally performed implementing phylogenetic linear models where single outcomes are regressed against multiple predictors without explicitly modelling the relationships amongst predictors. A prevailing, yet largely overlooked consequence of neglecting these relationships is what we introduce as Occams bias - a statistical distortion arising where the model has fewer cause-effect connections than predicted by theory. Here, we propose that Occams bias is likely to have impacted a wide range of inferences about ecological and evolutionary processes made from phylogenetic linear models across the literature, and thus, that the adoption of approaches to address this bias are critical. We present an empirical test of the long-standing hypothesis that interspecific variation in life-history traits influences the likelihood of extinction risk across 13,949 species of terrestrial vertebrates to show the impacts of Occams bias in phenomenological inference. Our study calls for a re-evaluation of hypotheses tested using the traditional linear modelling structure and advocate the use and continued development of multi-response model structures that account for all causal pathways in phylogenetic analyses.

evolutionary biology↗

Global assessment of interventions for mitigation of amphibian fungal disease is dominated by geoeconomic trends and antifungal success

Globalisation networks--a rapidly expanding factor behind Anthropocene environmental erosion--facilitate the accelerating spread of invasive species and diseases globally. Among wildlife infectious diseases, chytridiomycosis (caused by the fungal pathogen Batrachochytrium dendrobatidis, or Bd) has been widely implicated with the alarming global decline of amphibians-- natures most endangered organisms. Over the last few decades, a range of interventions have been tested to mitigate the annihilating impacts of Bd on amphibian communities, with high disparity in success. However, no integrative quantitative assessment of the effectiveness of interventions exists, thus hindering a broader understanding about where actions and further research should be directed. Using a novel, globally comprehensive database of interventions, we show that antifungal treatments of itraconazole applied to individual tadpoles seem offer the best results compared to other interventions. Further, trials performed ex situ, predominantly applied in the Global North, may severely bias the ability to assess the effectiveness of treatments applied in more biodiverse areas, across species that have been most severely affected. Our study is a call to continue experimentation on promising novel methods and to expand the geographic and taxonomic deployment of interventions to approach a robust evidence-based understanding of the effectiveness of treatments.

ecology↗

Temporal and spatial patterns of vertebrate extinctions during the Anthropocene

The human-induced annihilation of modern biodiversity is dragging the planet into a mass extinction that has already altered patterns of life globally. Among vertebrates, over 500 species have become extinct or possibly extinct in the last five centuries - an extinction rate that would have taken several millennia without human intervention. Vertebrate extinctions have often been quantified as cumulative counts that reveal sharp increases in losses over time. Here, we quantify global tetrapod extinctions since the 1400s using numbers of species losses across successive and independent time periods until present. Our results reveal that extinctions were low and fundamentally restricted to islands in pre-industrial times, experiencing a significant increase and spread over continental mainland following the onset of the industrial revolution. Recent amphibian extinctions alarmingly exceed the extinctions of all tetrapods, while extinctions of island birds account for a third of all extinctions. Finally, we quantified the relationship between human population growth (HPG, as a proxy for aggregate human effects on the environment) and extinctions between 1800-2000, to then predict that an estimated 838 tetrapod species will go extinct between 2030-2100 based on United Nations HPG projections. These findings further warn humanity about the need to sustainably control HPG and the destructive impacts of rapid environmental change on ecosystems worldwide.

ecology↗