Biology subjects

Gonzalez-Bodi, S.

Publications and source records attributed to Gonzalez-Bodi, S..

5 recordsLinked to original sources

bioRxiv2026

Reduced benzoxazinoid defences favour maize beneficial colonisation by Colletotrichum tofieldiae

O_LISpecialised defence metabolites mediate plant-microbe interactions, but their regulation during beneficial associations in cereals remains poorly understood. Here we investigate how maize (Zea mays) chemical defences are modulated during interaction with the beneficial fungal endophyte Colletotrichum tofieldiae (strain Ct0861) to promote host growth. C_LIO_LITo elucidate the molecular basis of this interaction, we combined transcriptomics, metabolite analyses and functional assays. To assess benzoxazinoids (BXs) roles at the plant-fungus interface, we compared Ct0861 colonisation and growth-promotion in wild-type maize and the BX-deficient bx1::DS mutant, using the pathogen Colletotrichum graminicola (CgM1.001) as reference. C_LIO_LITranscriptomic analyses revealed coordinated regulation of specialised defence pathways during the initial stages of Ct0861 colonisation, featuring systemic induction of terpenoid phytoalexin biosynthesis alongside localised suppression of roots BXs. Metabolomic analyses showed reduced apoplastic MBOA in Ct0861-colonised roots. Toxicity assays evidenced that Ct0861, unlike CgM1.001, is highly sensitive to MBOA. Accordingly, Ct0861 accumulation and growth-promoting effects were significantly enhanced in the bx1::DS mutant without causing disease symptoms. C_LIO_LIOur findings indicate that BXs restrict Ct0861 maize colonisation, where BX deficiency increases fungal biomass and enhances growth promotion. Understanding how crops fine tune specialised metabolism to balance microbial restriction with beneficial accommodation provides valuable insights for sustainable agriculture. C_LI

plant biology↗

bioRxiv2026

Metabolic commitment and nitrogen control of diazotrophy in the diazoplast-containing diatom Epithemia adnata

Earths nitrogen cycle is central to sustaining ecosystem productivity and global biogeochemical balance. Although biological N2-fixation is well characterized in prokaryotes and plant symbioses, in other eukaryotic lineages it remains poorly understood. Diatoms of the family Rhopalodiacea harbor diazoplasts, endosymbiotic spheroid bodies specialized for N2-fixation. This makes these diatoms genuine N2-fixing eukaryotes that represent a unique model for organelle evolution, parallel but distinct from haptophyte nitroplasts. Here, we report the isolation and stable cultivation of an Epithemia adnata strain, the sequencing of its diazoplast genome and its proteomic profile when growing diazotrophically in the light or darkness, or upon exposure to ammonium. Our analyses reveal that ammonium induced broad down-regulation of diazoplast proteins, particularly those linked to N2-fixation, ATP synthesis, and central carbon metabolism underscoring a general regulatory commitment toward diazotrophic metabolism tightly coupled to host carbon and nitrogen status. The pentose phosphate pathway and ferredoxin-NADP oxidoreductase appear as likely source of reductant to nitrogenase. A striking enrichment of chaperones, peroxiredoxins, bacterioferritin-like proteins, and DpsA might stabilize nitrogenase and buffer against oxidative stress during light-driven diazotrophy. Importantly, we identified a plasmid-encoded GlpF as a putative glycerol transporter, pointing to glycerol-mediated host-symbiont metabolic integration in the extant symbiosis and possibly a crucial innovation during the early evolutionary stages of its establishment. Thus, diazoplast activity is not autonomous but requires integration with host carbon and nitrogen status, establishing glycerol transport, reductant supply, stress mitigation, and nutrient-responsive regulation as pivotal mechanisms of nitrogenase activity and host integration. These findings have broad implications for biogeochemical cycling, organellogenesis, and synthetic biology strategies aimed at engineering N2-fixation in crop plants. SignificanceN2-fixing eukaryotes are increasingly recognized as abundant algae containing bacterial-derived diazotrophic endosymbionts, representing an underappreciated component of global N cycling. Diazoplasts in rhopalodiacean diatoms represent a compelling example of such endosymbionts specialized for N2-fixation. By combining genomic sequencing and proteomic analysis, we demonstrate their metabolic specialization, host integration, and regulatory commitment to diazotrophy. These findings reinforce the emerging view that diazoplasts function as organelle-like entities dedicated to N2-fixation, dependent on host-supplied carbon while contributing fixed N in return. Beyond giving evolutionary insights into organellogenesis, this work establishes a framework for translational applications, such as engineering N2-fixation into agricultural plants. Such advances could reduce reliance on synthetic fertilizers, influence biogeochemical cycles, and promote sustainable food production.

plant biology↗

bioRxiv2025

Root growth promotion by Penicillium melinii: mechanistic insights and agricultural applications

O_LIThis study characterizes Penicillium melinii, an endophytic fungus isolated from Arabidopsis thaliana roots, as a plant growth-promoting fungus with potential use as a model to study root development and as a biostimulant for sustainable agriculture. Although endophytes are known to promote plant growth, the underlying molecular mechanisms often remain poorly understood. Here, we aimed to elucidate how P. melinii enhances root system development and to assess its applicability across different crops. C_LIO_LIPhenotypic assays were conducted in Arabidopsis, quinoa and tomato under in vitro, greenhouse and field conditions. Root architecture and biomass were quantified using image-based phenotyping. Transcriptomic and phytohormone profiling assessed plant responses, and fungal genome sequencing coupled with secretome analysis was used to identify candidate effectors and metabolic traits. C_LIO_LIP. melinii consistently promoted root growth and increased plant biomass across species and environments, both in vitro and in the greenhouse. In tomato field trials, this translated into a significant increase in yield. The fungus colonized root surfaces without vascular penetration and triggered a mild transcriptomic response: early activation of stress-response genes followed by their attenuation and sustained upregulation of auxin-related pathways. Notably, the interaction modulates the SLR-ARF-LBD pathway and the number of pre-branch sites probably through increased auxin signalling in the oscillation zone. Additional hormonal changes were limited and mainly associated with the attenuation of the plant response to microorganisms. C_LIO_LIP. melinii enhances lateral root formation through a subtle molecular and metabolic dialogue with the host plant, underscoring its relevance as a model for studying root developmental plasticity. Its strong and reproducible growth-promoting effect, demonstrated with different fungal strains and under controlled and field conditions, supports its potential as a biostimulant for sustainable crop production. C_LI

plant biology↗

bioRxiv2025

Plant Growth Promoting fungal endophyte Colletotrichum tofieldiae Ct0861 reduces mycotoxigenic Aspergillus fungi in maize grains

1.BackgroundMaize (Zea mays L.) is a globally critical crop that faces numerous challenges, including contamination by mycotoxigenic fungi such as Aspergillus spp., which threaten food safety and marketability. This study evaluates the potential of the fungal endophyte Colletotrichum tofieldiae strain Ct0861 as a bioinoculant to enhance maize productivity and investigates its impact on the maize-associated bacterial and fungal microbiomes. ResultsField trials showed that Ct0861 treatment enhances biomass and yield compared to controls, irrespective of the application method assayed (seed or spray application). Comprehensive microbiome profiling across soil, rhizosphere, roots, leaves, and grains revealed that Ct0861 inoculation induced subtle, compartment-specific effects on microbial diversity and composition, with similar effects for the two application methods used. Fungal alpha-diversity in grains was significantly reduced, while beta-diversity analyses showed localized shifts, particularly in soil and grain-associated microbial communities. Despite these changes, the core microbiome assemblages remained stable, indicating minimal alteration to the broader microbiome structure. Remarkably, Ct0861 significantly reduced the prevalence of Aspergillus spp. in maize grains, as confirmed by controlled infection assays. This reduction resulted in lower aflatoxin levels, demonstrating the biocontrol potential of Ct0861. ConclusionThese findings underscore Ct0861s dual benefits in enhancing crop yield and safety reducing fungal mycotoxin contamination. Further studies are necessary to elucidate the underlying mechanisms and expand its application across diverse agroecosystems.

microbiology↗

bioRxiv2024

Maize associated bacterial and fungal microbiomes show contrasting conformation patterns that are resilient to water availability

Plant-associated microorganisms can help crops to alleviate water stress and increase the resilience of agricultural ecosystems to climate change. However, we still lack knowledge on the dynamics of bacterial and fungal microbial kingdoms within the soil and plant microbiomes and the response of these communities to different conditions such us, for example, water restrictions. This information is essential for the development of microbiome-based solutions to improve crop resilience to stressors associated to climate change. In this work, we explored: i) the conformation of the bacterial and fungal assemblages of different soil and plant compartments (bulk soil, rhizosphere, roots, leaves and grains) along the crop cycle of maize in an open field trial; and ii) the effect of water restriction on the maize microbiome comparing optimal irrigation with a 30% reduction of water supply. Our results show that microbial communities are highly structured along soil and plant compartments, with contrasting patterns for bacteria and fungi that were intensified towards the end of the plant cycle. Root showed the most differentiated bacterial assemblage while fungi conformed a very distinct community in the leaf, suggesting a relevant contribution of aerial fungal propagules to the microbiome of this plant organ. Despite the reductions in plant growth and yield, the microbiome of limited-watered plants did not show severe alterations. Still, significant impacts were observed within compartments, being fungi more responsive to limited watering than bacteria. Network analysis suggest that bacteria and fungi may play different roles in the shifts observed under water stress.

microbiology↗