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Gonzalez, B.

Publications and source records attributed to Gonzalez, B..

18 recordsLinked to original sources

CD300f is required for efficient lipid handling during cuprizone-induced demyelination

Microglia play a crucial role in central nervous system homeostasis and response to demyelination, yet the mechanisms that coordinate the sensing and processing of myelin-derived lipids remain poorly understood. CD300f is a lipid-sensing innate immune receptor expressed by myeloid cells that has been implicated in tissue damage sensing, phagocytosis, and lipid metabolism. Here, we investigated the role of CD300f in the cuprizone-induced demyelination model. Using CD300f-deficient mice, we demonstrate exacerbated demyelination, increased lipid droplet accumulation, impaired microglial responses, and reduced remyelination accompanied by motor coordination deficits. Bulk RNA sequencing of the corpus callosum at the peak of demyelination revealed enrichment of homeostatic, disease-associated (DAM), and foamy microglial signatures, together with increased expression of genes involved in lysosomal function, phagocytosis, inflammation, and lipid metabolism. Notably, these transcriptional changes were associated with marked lipid droplet accumulation in microglia and enrichment of microglial states previously linked to chronic demyelinating lesions. These findings suggest that CD300f is required for efficient handling of myelin-derived lipids and for microglial metabolic adaptation during demyelination. Our study identifies CD300f as a critical regulator of microglial function and lipid homeostasis and highlights this receptor as a potential therapeutic target in demyelinating diseases.

neuroscience↗

Detection of Melanoma Using Deep Serum Proteome Profiling and Machine Learning

Early detection determines melanoma outcomes, yet current screening relies on visual inspection that misses molecular changes preceding clinical diagnosis. To identify serum protein signatures of melanoma development, we leveraged the Department of Defense Serum Repository, analyzing 390 longitudinal serum samples from 73 melanoma cases and matched controls across four timepoints (4 and 2 years prior, diagnosis, and 2 years post-diagnosis) using data-independent acquisition mass spectrometry with Seer Proteograph nanoparticle enrichment. We quantified 3,364 proteins and applied machine-learning strategies combining cross-sectional case-control comparisons with longitudinal tracking of within-individual changes. Cross-sectional analysis at diagnosis achieved AUC 0.823 (95% CI: 0.723-0.923), identifying eight consensus features selected in >50% of cross-validation folds: PRSS1, GSK3B, FAM20C, CES1, CCL14, EPHA10, LMAN2, and ITIH1. These signatures, spanning proteases, immune activation, and extracellular matrix remodeling, demonstrate proof-of-concept for serum-based melanoma detection and provide candidate biomarkers for validation.

Cancer Biology↗

Distinct foraging goals shape floral resource use in a generalist solitary bee

A central challenge in characterizing species niches is ensuring that foraging data accurately capture both the resources used and their relative importance, and the role of resource abundance in shaping foraging patterns. Most studies infer diet breadth and resource-use patterns from observational records, yet such data can mask resource-specific decisions when animals forage with different goals. Here, we test this experimentally using individually identifiable bees in controlled resource communities to quantify foraging decisions between nectar (for sustenance) and pollen (for offspring provisioning). Combining observations, pollen DNA metabarcoding, and pollen microscopy, we show that observed visitation patterns misrepresent the floral resources most important for offspring provisioning, which ultimately determines offspring survival and population persistence. We further show that interaction patterns are structured from processes beyond resource abundance. Our results demonstrate that commonly used observational approaches can mischaracterize diet breadth, potentially challenging conclusions about species generalization.

ecology↗

Innovative 3D-image analysis of cerebellar vascularization highlights angiogenic gene dysregulations in a murine model of apnea of prematurity

Apnea of prematurity (AOP) affects 50% of preterm infants causing intermittent hypoxia (IH), which can lead to long-term neurodevelopmental deficits. Cerebellar abnormalities have been observed in AOP but the relationship between vascular alterations and neural development remains unclear. This study investigates how IH affects cerebellar angiogenesis using a murine model of AOP. We developed an innovative 3D imaging workflow combining IMARIS and VesselVio software to quantitatively analyze cerebellar vascularization at different postnatal stages (P4, P8, P12, P21, and P70). We correlate these results with a transcriptomic analysis of 23 angiogenesis-related genes in the same stages to uncover the associated molecular pathways. We found that IH induced significant vascular changes, particularly at P4, with a global increase in vascular-network dimensions. By P8, the vascular network normalized, but genes were downregulated in all pathways studied. After P12, at the end of the IH protocol, transcriptional regulations vary but persist long-term. Moreover, differential analysis showed distinct effects on superficial versus deep vascular networks, allowing for a more precise understanding of remodeling patterns throughout development. Overall, transcriptomic changes were associated with morphological alterations in a time-dependent manner, suggesting a multiphasic IH response through development with lasting effects. Key regulations included VEGF, angiopoietin, and matrix metalloprotease signaling. These findings demonstrate that IH disrupts cerebellar angiogenesis in parallel with neurogenesis, potentially contributing to the neurodevelopmental deficits observed in AOP. Thus, the interconnected nature of angio- and neurogenesis during cerebellar development makes it crucial to take vascular aspects into account in therapeutic approaches to neurodevelopmental disorders. HighlightsO_LINovel 3D imaging workflow reveals cerebellar vascular changes in apnea of prematurity mouse model C_LIO_LIIntermittent hypoxia induces early hypervascularization at P4 followed by later adaptation C_LIO_LISuperficial and deep vascular networks show distinct responses to intermittent hypoxia C_LIO_LIVascularization-related genes are affected during cerebellar development C_LIO_LIAlterations in angiogenesis go together with neurodevelopmental defects C_LI

neuroscience↗

Metagenomics reveal allopatric speciation and higher connectivity among coastal vs. inland hypersaline lakes and solar salterns

Hypersaline environments, due to their discrete and geographically isolated nature, constitute ideal systems for studying evolutionary patterns and microbial diversification, and especially here when contrasting coastal with inland systems. Based on metagenomic comparisons of 25 hypersaline sites across 11 countries, we explored the influence of environmental factors, ionic composition, and geographic distance on their microbial community structures and taxa diversification. Our results revealed that microbial communities from coastal environments were taxonomically and functionally more similar to each other than to those from inland sites. A distance-decay relationship in the genetic relatedness, significantly more pronounced for the coastal sites, was observed among reconstructed metagenome-assembled genomes (MAGs), clearer at distances below 400 km, but still detectable across global scales up to 20,000 km. The 484 MAGs recovered, representing 284 distinct species, revealed a striking global ubiquity, with 62.5% of the species showed cosmopolitanism as were detected across multiple sites. The higher taxonomic and genetic similarity of coastal environments over the inland sites seems to reflect an environmental connection that may be related to the ocean current dynamics. Most cosmopolitan species showed clear allopatric differentiation, although few cases of a single globally dominant genomovar (average nucleotide identity, ANI > 99.8%) were also observed, especially for some Haloquadratum species. The findings suggest that coastal hypersaline systems are loosely constrained by geographic isolation, with clear signals of allopatric speciation at the mesoscale (tenths to hundreds of kilometers) that become blurrier at larger scales.

microbiology↗

Deciphering Ibogaines Matrix Pharmacology: Multiple Transporter Modulation at Serotonin Synapses

Ibogaine is the main psychoactive alkaloid produced by the iboga tree (Tabernanthe iboga) that has a unique therapeutic potential across multiple indications, including opioid dependence, substance use disorders, depression, anxiety, posttraumatic stress disorder (PTSD), and traumatic brain injury (TBI). We systematically examined the effects of ibogaine, its main metabolite noribogaine, and a series of iboga analogs at monoamine neurotransmitter transporters, some which have been linked to the oneiric and therapeutic effects of these substances. We report that ibogaine and noribogaine inhibit the transport function of the vesicular monoamine transporter 2 (VMAT2) with sub-micromolar potency in cell-based fluorimetry assays and at individual synaptic vesicle clusters in mouse brain as demonstrated via two-photon microscopy. The iboga compounds also inhibit the plasma membrane monoamine transporters (MATs), prominently including the serotonin transporter (SERT), and a novel iboga target, the organic cation transporter 2 (OCT2). SERT transport inhibition was demonstrated in serotonin axons and soma in the brain and in rat brain synaptosomes, where ibogaine and its analogs did not act as substrate-type serotonin releasers. Noribogaine showed dual inhibition of VMAT2 and SERT with comparable potency, providing an explanatory model for the known neurochemical effects of ibogaine in rodents. Together, the updated profile of the monoamine transporter modulation offers insight into the complexity of the iboga pharmacology, which we termed "matrix pharmacology". The matrix pharmacology concept is outlined and used to explain why ibogaine and noribogaine do not induce catalepsy, as demonstrated in our study, in contrast to other VMAT2 inhibitors. TOC Graphic O_FIG O_LINKSMALLFIG WIDTH=200 HEIGHT=110 SRC="FIGDIR/small/641351v1_ufig1.gif" ALT="Figure 1"> View larger version (31K): org.highwire.dtl.DTLVardef@a1cacaorg.highwire.dtl.DTLVardef@8be27org.highwire.dtl.DTLVardef@1fc320forg.highwire.dtl.DTLVardef@3a8837_HPS_FORMAT_FIGEXP M_FIG C_FIG

neuroscience↗

Centriole Loss in Embryonic Development Disrupts Axonal Pathfinding and Muscle Integrity

Centrosomes, the primary microtubule-organizing centres (MTOCs), are important during early neuronal development, contributing to polarity establishment and axon formation. Although once considered dispensable in differentiated cells, accumulating evidence suggests that centrosomes remain active in many cell types, with functions that depend on cellular context. In mammalian neurons, centrosome-dependent microtubule (MT) remodelling has been implicated in axon elongation, and centrosome dysfunction has been associated with axonal guidance defects. While active centrosomes have been observed in Drosophila melanogaster tracheal cells, their neuronal activity in vivo has remained unclear. Here, we examined Drosophila Sas-4 mutants, which undergo gradual centrosome loss (CL), and found that 50% of homozygous mutants fail to hatch. Analysis revealed the presence of centrosomes in wild-type motor and sensory neurons, with centrosomes localizing near nascent axons in motor neurons. Embryonic CL altered axonal routing and muscle organization, and targeted Sas-4 reduction in pioneer neurons produced mild guidance phenotypes. Centrosome MTOC activity was confirmed by tubulin localization and MT reassembly analyses. In addition, CL was associated with increased motor axon tortuosity, consistent with a contribution of centrosomes to neuronal morphology. Together, these findings indicate that centrosomes, while not acting as essential MTOCs in this context, contribute to MT dynamics and aspects of early axonal and muscle development.

cell biology↗

Chronic IL-6 overproduction induces a tolerogenic response in aged mice after peripheral nerve injury

Highlights/Main pointsO_LIAstrocyte-targeted IL-6 overproduction during aging increases basal microglial acivation in the facial nucleus. C_LIO_LIDuring aging, chronic IL-6 overproduction does not modify microglial response after peripheral nerve injury but increases T-lymphocyte infiltration. C_LIO_LIChronic IL-6 overproduction in aged mice does not modify facial motor neuron survival after facial nerve axotomy. C_LI Interleukin-6 (IL-6) is the main cytokine controlling neuroinflammation and microglial activation during aging, and the increase of IL-6 levels correlate well with chronic neuroinflammation and age-related neurodegenerative diseases. Despite the relevance of IL-6 in these conditions, the effect of this cytokine in microglia activation and neuroinflammation upon CNS injuries during aging has been scarcely explored. Previous results from our group showed that adult and aged transgenic mice with astrocyte-targeted overproduction of IL-6 (GFAP-IL6Tg) presented features of a primed microglial phenotype in basal conditions compared to wild-type (WT) mice, and that after CNS lesions, microglia showed and exacerbated response associated with increased neuronal death in adult mice. In this work, we aimed to study whether chronic IL-6 overproduction influenced microglia response to CNS injury during aging. With this aim, we performed facial nerve axotomy (FNA) in aged 21-23-month-old WT and GFAP-IL6Tg animals, and analysed facial motor neuron (FMN) survival, glial reactivity, antigen presentation, and lymphocyte infiltration both at basal conditions (non-lesioned) and after FNA. Our results showed that non-lesioned aged transgenic mice presented higher Iba1, CD11b, and CD68 levels than aged WT mice, indicative of a priming effect in the aged facial nucleus. After FNA, we detected similar levels of microglial and astroglia activation, but a remarkable increase in T-lymphocyte infiltration in GFAP-IL6Tg axotomized group. Despite slight differences in the neuroinflammatory response, aged GFAP-IL6Tg animals showed a similar rate of FMN death compared to aged WT mice. Overall, our work shows that transgenic IL-6 overproduction induces a primed microglial phenotype under basal conditions in aged animals, with a reduced fold-increase in the microglial response after FNA compared to aged WT mice and similar lesion outcomes, suggestive of a tolerant microglial phenotype. This study suggests a tolerant effect of chronic IL-6 overproduction in microglia during aging in basal conditions and after CNS lesions.

neuroscience↗

Noribogaine effects on wakefulness and sleep

Ibogaine is a potent atypical psychedelic that has gained considerable attention due to its antiaddictive and antidepressant properties in preclinical and clinical studies. Previous research from our group showed that ibogaine suppresses sleep and produces an altered wakefulness state which resembles natural REM sleep. However, after systemic administration, ibogaine is rapidly metabolized to noribogaine, which also shows antiaddictive effects and a distinct pharmacological profile, making this drug a promising therapeutic candidate. Therefore, whether the sleep/wake alterations depend on ibogaine or its principal metabolite noribogaine remains unknown. To answer this question, we conducted polysomnographic recordings in rats following the administration of pure noribogaine. Our results show that noribogaine promotes wakefulness while reducing slow-wave sleep and blocking REM sleep. Thus, like ibogaine, noribogaine significantly alters the sleep-wake architecture, highlighting the possible role of serotonin reuptake inhibition as a likely candidate underlying the wake-promoting and REM sleep-suppressing effects.

neuroscience↗

New Features Surrounding the Cdc42-Ste20 Module that Regulates MAP Kinase Signaling in Yeast

Mitogen-activated protein kinase (MAPK) pathways regulate multiple cellular responses, including the response to stress and cell differentiation, and are highly conserved across eukaryotes from yeast to humans. In yeast, the canonical activation of several MAPK pathways includes the interaction of the small GTPase Cdc42p with the p21-activated kinase (PAK) Ste20p. We recently found that the active conformation of Cdc42p is regulated by turnover, which impacts the activity of the pathway that regulates filamentous growth (fMAPK). Here, we show that Ste20p is turned over by the 26S proteasome. Ste20p was stabilized when bound to Cdc42p, presumably to sustain MAPK pathway signaling. Ste20p is a major conduit by which signals flow through the fMAPK pathway; however, by genetic approaches we also identified a Ste20p-independent branch of the fMAPK pathway. Ste20p-dependent signaling required the 14-3-3 proteins, Bmh1p and Bmh2p, while Ste20p-independent signaling required the fMAPK pathway adaptor and Cdc42p-interacting protein, Bem4p. Ste20p-independent signaling was inhibited by one of the GTPase-activating proteins for Cdc42p in the fMAPK pathway, Rga1p, which also dampened basal but not active fMAPK pathway activity. Finally, the polarity adaptor and Cdc42p-interacting protein, Bem1p, which also regulates the fMAPK pathway, interacts with the tetra-span protein Sho1p, connecting a sensor at the plasma membrane to a protein that regulates the GTPase module. Collectively, these data reveal new regulatory features surrounding a Rho-PAK module that may extend to other pathways that control cell differentiation.

biochemistry↗

Exploring the Regulation of Cdc42 Stability and Turnover in Yeast

Rho GTPases govern many cellular processes, including actin cytoskeleton dynamics and signal transduction pathways. Rho GTPase levels can be regulated by stability and turnover, yet many aspects of this type of regulation remain largely unexplored. We report here a new environmental stress, high temperature (37{degrees}C), that stimulates yeast Cdc42p turnover to impact its biological functions. At 37{degrees}C, Cdc42p turnover required the NEDD4 ubiquitin ligase Rsp5p and HSP40/HSP70 chaperones. Specific lysine residues promoted Cdc42p degradation at 37{degrees}C [K166; and residues in the Poly-Basic (PB) domain: K183, K184, K186, K187], which occurred in both the 26S proteosome and ESCRT-to-vacuole pathway. Degradation of Cdc42p at 37{degrees}C reduced the sensitivity to mating pheromone, demonstrating biological role for Cdc42p turnover in this context. Stabilization of Cdc42p at high temperatures restored pheromone sensitivity but caused growth and polarity defects, suggesting a tradeoff between sexual propagation and cellular fitness. One lysine residue (K16) in the P-loop of the protein was critical for stability. Overproduction of the protein, expression of Cdc42pK16R in a mutant where the protein accumulates, and other types of proteostatic stress led to the formation of Cdc42p aggregates in aging mother cells. These new aspects of Cdc42p protein quality control may extend to other members of the Rho GTPase family of proteins. Summary statementRho GTPases regulate cell polarity and signaling (e.g. MAPK) pathways. Here, we discovered that yeast Cdc42p is targeted for degradation at 37{degrees}C by a NEDD4 ubiquitin ligase and HSP40 and HSP70 chaperones through lysine residues in the C-terminus of the protein. At 37{degrees}C, Cdc42p was degraded both by the 26S proteasome and in an ESCRT-dependent manner in the vacuole. Preventing Cdc42p turnover at 37{degrees}C resulted in improved mating sensitivity but also viability and polarity defects, suggesting a tradeoff between sexual responses and fitness. In addition, one residue (K16) was critical for Cdc42p stability. Cdc42pK16R formed aggregates in aging mother cells, and aggregates were also observed in cells undergoing proteostatic stress. Protein quality control regulation of a Rho-type GTPase therefore has ramification in the regulation of cellular responses, evolutionary tradeoffs, and protein aggregation in ways that might impact aging. HIGHLIGHTSO_LIHigh temperatures (37{degrees}C) induce turnover of the Rho GTPase Cdc42p C_LIO_LITurnover of Cdc42p at 37{degrees}C requires the HSP40/HSP70 proteins and the NEDD4-type E3 ubiquitin ligase Rsp5p. C_LIO_LIK166 and four lysines at the extreme C-terminus [poly-basic (PB: K183, K184, K186, K187] promote turnover of Cdc42p at 37{degrees}C C_LIO_LICdc42p is degraded at 37{degrees}C by the proteosome and the ESCRT-to-vacuole pathways. C_LIO_LIGTP-Cdc42p does not accumulate in ESCRT mutants and is not turned over in the vacuole. C_LIO_LITurnover of Cdc42p at 37{degrees}C inhibits sensitivity to mating pheromone Preventing Cdc42p turnover restores pheromone sensitivity at the cost of cell viability and proper cell polarity. These results reveal a tradeoff between sexual responses and overall cellular fitness. C_LIO_LIAn internal lysine residue (K16) is required for Cdc42p stability. O_LIverproduction of the protein, or accumulation of Cdc42pK16R in certain mutants induces protein aggregation in aging mother cells. C_LI C_LI

cell biology↗

Transcriptome profiling of histone acetylation and methylation writers and erasers families across male germ cell development and pre-cleavage zygote

Accumulating evidence points out that sperm carry epigenetic instructions to embryo in the form of retained histones marks and RNA cargo that can transmit metabolic and behavioral traits to offspring. However, the mechanisms behind epigenetic inheritance of paternal environment are still poorly understood. Here, we curated male germ cells RNA-seq data and analyzed the expression profile of all known histone lysine writers and erasers enzymes across spermatogenesis, unraveling the developmental windows at which they are upregulated, and the specific activity related to canonical and non-canonical histone marks deposition and removal. We also characterized the epigenetic enzymes signature in the mature sperm RNA cargo, showing most of them positive translation at pre-cleavage zygote, suggesting that paternally-derived enzymes mRNA cooperate with maternal factors to embryo chromatin assembly. Our study shows several histone modifying enzymes not described yet in spermatogenesis and even more, important mechanistic aspects behind transgenerational epigenetics. Epigenetic enzymes not only can respond to environmental stressors, but could function as vectors of epigenetic information and participate in chromatin organization during maternal-to-zygote transition.

developmental biology↗

Turnover Regulation of the Rho GTPase Cdc42 by Heat Shock Protein Chaperones and the MAPK Pathway Scaffold Bem4

All cells maintain an axis of polarity that directs the orientation of growth. Cell polarity can be reorganized during development and in response to extrinsic cues to produce new cell types. Rho GTPases are central regulators of cell polarity and signal-dependent cell differentiation. We show here that one of the best understood Rho GTPases, the highly conserved yeast Cdc42p, is turned over by members of the Heat Shock family of Proteins (HSPs). The Hsp40p chaperone, Ydj1p, was required for turnover of Cdc42p by the NEDD4 E3 ubiquitin ligase, Rsp5p, in the proteosome. Cdc42p turnover was regulated by HSPs at high temperatures, and in aging cells where the protein formed aggregates, implicating HSPs in Rho GTPase quality control. We also show that Cdc42pQ61L, which mimics the active (GTP-bound) conformation of the protein, was turned over at elevated levels by Ydj1p and Rsp5p. A turnover-defective version of Cdc42pQ61L led to multibudding phenotypes, implicating Cdc42 turnover in singularity in cell polarization. Cdc42p turnover also impacted MAP kinase pathway specificity. A pathway-specific scaffold, Bem4p, stabilized Cdc42p levels, which biased Cdc42p function in one MAPK pathway over another. Turnover regulation of Rho GTPases by HSPs and scaffolds provides new dimensions to the regulation of cell polarity and signal-dependent morphogenesis. Significance StatementRho GTPases are switch-like proteins that govern major decisions in cell polarity and signaling in eukaryotes. We elucidate here a pathway that turns over the yeast Rho GTPase Cdc42p, which is mediated by the heat-shock family of proteins (HSPs) and the NEDD4-type E3 ubiquitin ligase Rsp5p. This finding provides a way for HSPs to exert their widespread effects on morphogenetic responses, phenotypic plasticity, and signaling pathways. We also found that turnover of an active version of Cdc42p is critical for modulating cell polarity. Cdc42p turnover also impacted its function in a pathway specific setting, as stabilization of Cdc42p by Bem4p (SmgGDS-type scaffold) influenced the activity of a specific MAPK pathway. HSPs may regulate Rho GTPase turnover in many systems.

cell biology↗

Somatic hypomethylation of pericentromeric SST1 repeats and tetraploidization in human colorectal cancer cells

Somatic DNA hypomethylation and aneuploidy are hallmarks of cancer, and there is evidence for a causal relationship between them in knockout mice, but not in human cancer. The non-mobile pericentromeric repetitive elements SST1 are hypomethylated in about 17% of human colorectal cancers (CRC) with some 5-7% exhibiting a more severe age-independent demethylation. Tetraploidy is a common and early event in solid tumors generating subsequent aneuploidy. We compared the relative frequency of chromosomal variations during culture of randomly selected single cell clones of diploid LS174T human CRC cells differing in their levels of SST1 demethylation. Diploid cells underwent frequent genome reduplication events generating tetraploid clones that correlated with SST1 demethylation. In primary CRC, severe SST1 hypomethylation was significantly associated with global genomic hypomethylation and mutations in TP53. This work uncovers the association of the naturally occurring demethylation of the SST1 pericentromeric repeat with the onset of spontaneous tetraploidization in human CRC cells in culture, and with TP53 mutations in primary CRCs. Altogether, our findings provide further support for an oncogenic pathway linking somatic epigenetic and genetic alterations in a subset of human CRC.

cancer biology↗

Spatiotemporal Control of Pathway Sensors and Cross-Pathway Feedback Regulate a Cell Differentiation MAPK Pathway in Yeast

Mitogen-Activated Protein Kinase (MAPK) pathways control cell differentiation and the response to stress. MAPK pathways can share components with other pathways yet induce specific responses through mechanisms that remain unclear. In Saccharomyces cerevisiae, the MAPK pathway that controls filamentous growth (fMAPK) shares components with the MAPK pathway that regulates the response to osmotic stress (HOG). By exploring temporal regulation of MAPK signaling, we show here that the two pathways exhibited different patterns of activity throughout the cell cycle. The different patterns resulted from different expression profiles of genes encoding the mucin sensors (MSB2 for fMAPK and HKR1 for HOG). We also show that positive feedback through the fMAPK pathway stimulated the HOG pathway, presumably to modulate fMAPK pathway activity. By exploring spatial regulation of MAPK signaling, we found that the shared tetraspan protein, Sho1p, which has a dynamic localization pattern, induced the fMAPK pathway at the mother-bud neck. A Sho1p-interacting protein, Hof1p, which also localizes to the mother-bud neck and regulates cytokinesis, also regulated the fMAPK pathway. Therefore, spatial and temporal regulation of pathway sensors, and cross-pathway feedback, regulate a MAPK pathway that controls a cell differentiation response in yeast.

cell biology↗

Pilot production of SARS-CoV-2 related proteins in plants: a proof of concept for rapid repurposing of indoors farms into biomanufacturing facilities

The current CoVid-19 crisis is revealing the strengths and the weaknesses of the worlds capacity to respond to a global health crisis. A critical weakness has resulted from the excessive centralization of the current biomanufacturing capacities, a matter of great concern, if not a source of nationalistic tensions. On the positive side, scientific data and information have been shared at an unprecedented speed fuelled by the preprint phenomena, and this has considerably strengthened our ability to develop new technology-based solutions. In this work we explore how, in a context of rapid exchange of scientific information, plant biofactories can serve as a rapid and easily adaptable solution for local manufacturing of bioreagents, more specifically recombinant antibodies. For this purpose, we tested our ability to produce, in the framework of an academic lab and in a matter of weeks, milligram amounts of six different recombinant monoclonal antibodies against SARS-CoV-2 in Nicotiana benthamiana. For the design of the antibodies we took advantage, among other data sources, of the DNA sequence information made rapidly available by other groups in preprint publications. mAbs were all engineered as single-chain fragments fused to a human gamma Fc and transiently expressed using a viral vector. In parallel, we also produced the recombinant SARS-CoV-2 N protein and its Receptor Binding Domain (RBD) in planta and used them to test the binding specificity of the recombinant mAbs. Finally, for two of the antibodies we assayed a simple scale-up production protocol based on the extraction of apoplastic fluid. Our results indicate that gram amounts of anti-SARS-CoV-2 antibodies could be easily produced in little more than 6 weeks in repurposed greenhouses with little infrastructure requirements using N. benthamiana as production platform. Similar procedures could be easily deployed to produce diagnostic reagents and, eventually, could be adapted for rapid therapeutic responses.

synthetic biology↗

Arabidopsis thaliana interaction with Ensifer meliloti can support plant growth under N-deficiency

Nitrogen (N) is an essential macronutrient for plants. Some plant species obtain this nutrient by interacting with N-fixing bacteria. These beneficial interactions are well described in legumes but have also been observed in non-legume plant species that are unable to form root nodules. We studied the expanding role of beneficial plant-bacteria interactions for N-nutrition in the widely used model plant Arabidopsis thaliana. We found that the bacteria Ensifer meliloti enhanced A. thaliana growth under severe N-deficiency conditions, allowing plants to complete their life cycle. Our results showed that bacteria colonize the rhizosphere associated with the epidermis of the plant root. We also demonstrated that A. thaliana possesses genes that are critical for this beneficial interaction and are required for plant-growth promotion by E. meliloti under N-deficiency. This work shows association between A. thaliana and E. meliloti for plant nutrition under severe N-deficiency, and suggests that plants have conserved-molecular mechanisms to interact with N-fixing bacteria to procure N and escape adverse conditions. Under these circumstances, the supply of N via N-fixation is critical for survival, allowing the plant to complete its life cycle. Our findings provide a new framework and an experimental model system that expand our understanding of plant-rhizobia interactions for plant N-nutrition.

plant biology↗

Functions for Cdc42p BEM Adaptors in Regulating a Differentiation-Type MAP Kinase Pathway

Rho GTPases regulate cell polarity and signal transduction pathways to control morphogenetic responses in different settings. In yeast, the Rho GTPase Cdc42p regulates cell polarity, and through the p21-activated kinase Ste20p, Cdc42p also regulates mitogen-activated protein kinase (MAPK) pathways (mating, filamentous growth or fMAPK, and HOG). Although much is known about how Cdc42p regulates cell polarity and the mating pathway, how Cdc42p regulates the fMAPK pathway is not clear. To address this question, Cdc42p-dependent MAPK pathways were compared in the filamentous ({sum}1278b) strain background. Each MAPK pathway showed a unique activation profile, with the fMAPK pathway exhibiting slow activation kinetics compared to the mating and HOG pathways. A previously characterized version of Cdc42p, Cdc42pE100A, that is specifically defective for fMAPK pathway signaling, was defective for interaction with Bem4p, the pathway-specific adaptor for the fMAPK pathway. Corresponding residues in Bem4p were identified that were required for interaction with Cdc42p and fMAPK pathway signaling. The polarity adaptor Bem1p also regulated the fMAPK pathway. In the fMAPK pathway, Bem1p recruited Ste20p to the plasma membrane, cycled between an open and closed conformation, and interacted with the GEF for Cdc42, Cdc24p. Bem1p also regulated effector pathways in different ways, behaving as a multi-functional adaptor in some pathways and an inert scaffold in others. Genetic suppression tests showed that Bem4p and Bem1p regulate the fMAPK pathway in an ordered sequence. Collectively, the study demonstrates unique and sequential functions for Rho GTPase adaptors in regulating MAPK pathways.\n\nHIGHLIGHTSO_LIComparing Cdc42p-dependent MAPK pathways showed that the fMAPK pathway had slow activation kinetics compared to the mating and HOG pathways.\nC_LIO_LIA collection of cdc42 alleles was tested for MAPK pathway functions.[§] Cdc42pE100A, previously characterized as being specifically defective for fMAPK signaling, showed reduced interaction with the fMAPK pathway adaptor Bem4p.\n[§]Corresponding residues in Bem4p were identified that were required for interaction with Cdc42p and fMAPK signaling.\n\nC_LIO_LIThe polarity adaptor Bem1p regulated the fMAPK pathway.[§] Bem1p regulated the fMAPK pathway by recruiting Ste20p to the plasma membrane, cycling between an open and closed conformation, and interacting with the Cdc42p GEF, Cdc24p.\n\nC_LIO_LIDifferent domains of Bem1p had different roles in regulating effector pathways.[§] Bem1p may function as a multi-functional adaptor in some pathways and an inert scaffold in others.\n\nC_LIO_LIBem4p and Bem1p regulated the fMAPK pathway in an ordered sequence.[§] The data support a model where Bem4p recruits Cdc24p to GDP-Cdc42p, and Bem1p directs GTP-Cdc42p to Ste20p at the plasma membrane.\n[§]The bud-site GTPase Rsr1p regulates Cdc24p in the fMAPK pathway but does not initiate signaling.\n\nC_LI

genetics↗