Biology subjects

Gomez, J.

Publications and source records attributed to Gomez, J..

5 recordsLinked to original sources

bioRxiv2018

Novel childhood experience suggests eccentricity drives organization of human visual cortex

The functional organization of human high-level visual cortex, such as face and place-selective regions, is strikingly consistent across individuals. A fundamental, unanswered question in neuroscience is what dimensions of visual information constrain the development and topography of this shared brain organization? To answer this question, we scanned with fMRI a unique group of adults who, as children, engaged in extensive experience with a novel stimulus-Pokemon-which are dissimilar from other ecological categories such as faces and places along critical dimensions (foveal bias, rectilinearity, size, animacy) from. We find that experienced adults not only demonstrate distinct and consistent distributed cortical responses to Pokemon, but their activations suggest that it is the experienced retinal eccentricity during childhood that predicts the locus of distributed responses to Pokemon in adulthood. These data advance our understanding about how childhood experience and functional constraints shape the functional organization of the human brain.

neuroscience↗

bioRxiv2018

New inhibitors of Mycobacterium tuberculosis identified using systems chemical biology

New antibiotics are needed to combat rising resistance, with new Mycobacterium tuberculosis (Mtb) drugs of highest priority. Conventional whole-cell and biochemical antibiotic screens have failed. We developed a novel strategy termed PROSPECT (PRimary screening Of Strains to Prioritize Expanded Chemistry and Targets) in which we screen compounds against pools of strains depleted for essential bacterial targets. We engineered strains targeting 474 Mtb essential genes and screened pools of 100-150 strains against activity-enriched and unbiased compounds libraries, measuring > 8.5-million chemical-genetic interactions. Primary screens identified >10-fold more hits than screening wild-type Mtb alone, with chemical-genetic interactions providing immediate, direct target insight. We identified > 40 novel compounds targeting DNA gyrase, cell wall, tryptophan, folate biosynthesis, and RNA polymerase, as well as inhibitors of a novel target EfpA. Chemical optimization yielded EfpA inhibitors with potent wild-type activity, thus demonstrating PROSPECTs ability to yield inhibitors against novel targets which would have eluded conventional drug discovery.

microbiology↗

bioRxiv2018

Apparent thinning of visual cortex during childhood is associated with myelination, not pruning

Microstructural mechanisms underlying apparent cortical thinning during childhood development are unknown. Using functional, quantitative, and diffusion magnetic resonance imaging in children and adults, we tested if tissue growth (lower T1 relaxation time and mean diffusivity (MD)) or pruning (higher T1 and MD) underlies cortical thinning in ventral temporal cortex (VTC). After age 5, T1 and MD decreased in mid and deep cortex of functionally-defined regions in lateral VTC, and in their adjacent white matter. T1 and MD decreases were (i) consistent with tissue growth related to myelin proliferation, which we verified with adult postmortem histology and (ii) correlated with apparent cortical thinning. Thus, contrary to prevailing theories, cortical tissue does not thin during childhood, it becomes more myelinated, shifting the gray-white matter boundary deeper into cortex. As tissue growth is prominent in regions with protracted functional development, our data suggest an intriguing hypothesis that functional development and myelination are interlinked.

neuroscience↗

bioRxiv2018

Learning to read increases the informativeness of distributed ventral temporal responses

Becoming a proficient reader requires substantial learning over many years. However, it is unknown how learning to read affects development of distributed visual representations across human ventral temporal cortex (VTC). Using fMRI and a data-driven, computational approach, we quantified the development of distributed VTC responses to characters (pseudowords and numbers) vs. other domains in children, preteens, and adults. Results reveal anatomical- and hemisphere-specific development. With development, distributed responses to words and characters became more distinctive and informative in lateral but not medial VTC, and in the left but not right hemisphere. While development of voxels with both positive (that is, word-selective) and negative preference to words affected distributed information, only development of word-selective voxels predicted reading ability. These data show that developmental increases in informativeness of distributed left lateral VTC responses enable proficient reading and have important implications for both developmental theories and for elucidating neural mechanisms of reading disabilities.

neuroscience↗

bioRxiv2017

Development differentially sculpts receptive fields across human visual cortex

Receptive fields (RFs) processing information in restricted parts of the visual field are a key property of neurons in the visual system. However, how RFs develop in humans is unknown. Using fMRI and population receptive field (pRF) modeling in children and adults, we determined where and how pRFs develop across the ventral visual stream. We find that pRF properties in visual field maps, V1 through VO1, are adult-like by age 5. However, pRF properties in face- and word-selective regions develop into adulthood, increasing the foveal representation and the visual field coverage for faces in the right hemisphere and words in the left hemisphere. Eye-tracking indicates that pRF changes are related to changing fixation patterns on words and faces across development. These findings suggest a link between viewing behavior of faces and words and the differential development of pRFs across visual cortex, potentially due to competition on foveal coverage.

neuroscience↗