Search bioRxiv⌕ Search

Biology subjects

Goetze, M.

Publications and source records attributed to Goetze, M..

3 recordsLinked to original sources

Distinct visual pathways of threat retrieval in fear-conditioned faces

Numerous studies have demonstrated rapid (< 100 ms) visuo-cortical differentiation of threat-associated faces. This may be due to low-spatial frequency (LSF) visual information originating from magnocellular pathways. Yet it remains unclear whether potentially magnocellular fear signals extend beyond evolutionarily prepared emotional faces and whether they are subject to short-term neuroplasticity. If so, spatial frequency characteristics should modulate processing of faces with newly acquired threat-relevance. Furthermore, it is unknown whether sub-bands of the visual spectrum are associated with autonomic arousal. Using a differential fear-conditioning paradigm, this study tested whether early visual attentional capture, indicated by the P1 event-related potential component, prioritizes LSF information of threat-associated faces with neutral expressions. Additionally, it was tested whether such effects would be paralleled by threat differentiation in the skin conductance response (SCR). For contingency aware participants, stimulus ratings confirmed successful fear conditioning and participants showed a selective left-hemispheric enhancement of the P1 in response to LSF threat-faces. By contrast, CS differentiation in the SCR was not modulated by spatial frequencies but by stimulus duration, with longer CS presentations resulting in larger SCR to threat compared to neutral faces. For contingency unaware participants, trial-by-trial amplitudes of P1 and SCR were positively correlated. Data support the notion that magnocellular-cortical pathways adapt quickly to novel threat-associations and facilitate rapid threat retrieval even for perceptually neutral faces. However, at least in the short term, these signals do not necessarily associate with anticipatory arousal in SCR. Impact statementOur electroencephalography (EEG) study provides evidence for distinct contributions of subcortical signals during early visual perception of fear-conditioned faces (P1 event-related potential) but not autonomic arousal (skin conductance response). Instead, skin conductance responses reflected conscious anticipatory arousal irrespective of the visual pathway. Together, these results reveal parallel but dissociable mechanisms of fear perception that are differentially sensitive to visual properties of threat-associated faces.

neuroscience↗

A Simple Cross-Linking/Mass Spectrometry Workflow to Study System-Wide Protein Interactions

We present a cross-linking/mass spectrometry (XLMS) workflow for performing proteome-wide cross-linking analyses within one week. The workflow is based on the commercially available MS-cleavable cross-linker disuccinimidyl dibutyric urea (DSBU) and can be employed by every lab having access to a mass spectrometer with tandem MS capabilities. We provide an updated version 2.0 of the freeware software tool MeroX, available at www.StavroX.com, that allows conducting fully automated and reliable studies delivering insights into protein-protein interaction networks and protein conformations at the proteome level. We exemplify our optimized workflow for mapping protein-protein interaction networks in Drosophila melanogaster embryos on a system-wide level. From cross-linked Drosophila embryo extracts, we detected 18,037 cross-link spectrum matches corresponding to 5,129 unique cross-linked residues in biological triplicate experiments at 5% FDR (3,098 at 1% FDR). Among these, 1,237 interprotein cross-linking sites were identified that contain valuable information on protein-protein interactions. The remaining 3,892 intra-protein cross-links yield information on conformational changes of proteins in their cellular environment.

molecular biology↗

Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines

The number of publications in the field of chemical cross-linking combined with mass spectrometry (XL-MS) to derive constraints for protein three-dimensional structure modeling and to probe protein-protein interactions has largely increased during the last years. As the technique is now becoming routine for in vitro and in vivo applications in proteomics and structural biology there is a pressing need to define protocols as well as data analysis and reporting formats that are generally accepted in the field and that have shown to lead to high-quality results. This first, community-based harmonization study on XL-MS is based on the results of 32 groups participating worldwide. The aim of this paper is to summarize the status quo of XL-MS and to compare and evaluate existing cross-linking strategies. From the results obtained, common protocols will be established. Our study serves as basis for establishing best practice guidelines in the field for conducting cross-linking experiments, performing data analysis, and reporting formats with the ultimate goal of assisting scientists to generate accurate and reproducible XL-MS results.

biochemistry↗