Biology subjects

Girard, P.-A.

Publications and source records attributed to Girard, P.-A..

3 recordsLinked to original sources

bioRxiv2024

Identification of a viral gene essential for the genome replication of a domesticated endogenous virus in ichneumonid parasitoid wasps

Thousands of endoparasitoid wasp species in the families Braconidae and Ichneumonidae harbor "domesticated endogenous viruses" (DEVs) in their genomes. This study focuses on ichneumonid DEVs, named ichnoviruses (IVs), which derive from an unknown virus and produce virions in ovary calyx cells during the pupal and adult stages of female wasps. Females inject IV virions into host insects when laying eggs. Virions infect cells which express IV genes with functions required for wasp progeny development. IVs have a dispersed genome consisting of two genetic components: proviral segment loci that serve as templates for circular dsDNAs that are packaged into capsids, and genes from an ancestral virus controlling virion production. Because of the lack of homology with known viral genes, the molecular control mechanisms of IV genome are largely uncharacterized. We generated a chromosome-scale genome assembly for Hyposoter didymator and identified a total of 67 H. didymator ichnovirus (HdIV) loci distributed across the 12 wasp chromosomes. By analyzing genomic DNA levels, we found that all HdIV loci were locally amplified in calyx cells during the wasp pupal stage, suggesting the implication of viral proteins in DNA replication. We tested a candidate HdIV gene, U16, encoding a protein with a conserved domain found in primases and which is transcribed in calyx cells during the initial stages of replication. Knockdown of U16 by RNA interference inhibited amplification of all HdIV loci, as well as HdIV gene transcription, circular molecule production and virion morphogenesis in calyx cells. Altogether, our results showed that viral DNA amplification is an early step of IV replication essential for virions production, and demonstrated the implication of the viral gene U16 in this process. Author SummaryParasitoid "domesticated endogenous viruses" (DEVs) provide a fascinating example of eukaryotes acquiring new functions through integration of a virus genome. DEVs consist of multiple loci in the genomes of wasps. Upon activation, these elements collectively orchestrate the production of virions or virus-like particles that are crucial for successful parasitism of host insects. Despite the significance of DEVs for parasitoid biology, the mechanisms regulating key steps in virion morphogenesis are largely unknown. In this study, we focused on the ichneumonid parasitoid Hyposoter didymator, which harbors an ichnovirus consisting of 67 proviral loci. Our findings reveal that all proviral loci are simultaneously amplified in ovary calyx cells of female wasps during the early pupal stage suggesting a hijacking of cellular replication complexes by viral proteins. We tested the implication of such a candidate, U16, encoding a protein with a weakly conserved primase C-terminal domain. Silencing U16 resulted in inhibited viral DNA amplification and virion production, underscoring the key role of this gene for ichnovirus replication. This study provides evidence that genes involved in viral DNA replication have been conserved during the domestication of viruses in the genomes of ichneumonid wasps.

microbiology↗

bioRxiv2019

Partner-specific induction of Spodoptera frugiperda immune genes in response to the entomopathogenic nematobacterial complex Steinernema carpocapsae-Xenorhabdus nematophila

The Steinernema carpocapsae-Xenorhabdus nematophila association is a nematobacterial complex (NBC) used in biological control of insect crop pests. The ability of this dual pathogen to infest and kill an insect strongly depends on the dialogue between the hosts immune system and each partner of the complex. Even though this dialogue has been extensively studied from the two partners points of view in several insect models, still little is known about the structure and the molecular aspects of the insects immune response to the dual infection. Here, we used the lepidopteran pest Spodoptera frugiperda as a model to analyze the respective impact of each NBC partner in the spatiotemporal immune responses that are induced after infestation. To this aim, we first analyzed the expression variations of the insects immune genes in the fat bodies and hemocytes of infested larvae by using previously obtained RNAseq data. We then selected representative immune genes for RT-qPCR investigations of the temporal variations of their expressions after infestation and of their induction levels after independent injections of each partner. We found that the fat body and the hemocytes both produce potent and stable immune responses to the infestation by the NBC, which correspond to combinations of bacterium- and nematode-induced ones. Consistent with the nature of each pathogen, we showed that X. nematophila mainly induces genes classically involved in antibacterial responses, whereas S. carpocapsae is responsible for the induction of lectins and of genes expected to be involved in melanization and cellular encapsulation. In addition, we found that two clusters of unknown genes dramatically induced by the NBC also present partner-specific induction profiles, which paves the way for their functional characterization. Finally, we discuss putative relationships between the variations of the expression of some immune genes and the NBCs immunosuppressive strategies.\n\nAuthor summaryEntomopathogenic nematodes (EPNs) are living in the soil and prey upon insect larvae. They enter the insect by the natural orifices, and reach the hemocoel through the intestinal epithelium. There, they release their symbiotic bacteria that will develop within the insect and eventually kill it. Nematodes can then feed and reproduce on the insect cadaver. By using transcriptomic approaches, we previously showed that Lepidoptera larvae (caterpillars of the fall armyworm Spodoptera frugiperda) produce a strong immune response in reaction to infestation by EPNs. However, we do not know if this immune reaction is triggered by the nematode itself -Steinernema carpacapsae - or its symbiotic bacteria - Xenorhabdus nematophila. To answer this question, we present in this work a careful annotation of immunity genes in S. frugiperda and surveyed their activation by quantitative PCR in reaction to an injection of the bacteria alone, the axenic nematode or the associated complex. We found that the immune genes are selectively activated by either the bacteria or the nematode and we discuss the implication of which pathway are involved in the defense against various pathogens. We also show that a cluster of newly discovered genes, present only in Lepidoptera, is activated by the nematode only and could represent nematicide genes.

immunology↗

bioRxiv2019

Spodoptera frugiperda transcriptional response to infestation by Steinernema carpocapsae

Steinernema carpocapsae is an entomopathogenic nematode (EPN) used in biological control of agricultural pest insects. It enters the hemocoel of its host via the intestinal tract and releases its symbiotic bacterium Xenorhabdus nematophila, which kills the insect in less than 48 hours. Although several aspects of its interactions with insects have been extensively studied, still little is known about the immune and physiological responses of its different hosts. In order to improve this knowledge, we examined the transcriptional responses to EPN infestation of the fat body, the hemocytes and the midgut in the lepidopteran pest model Spodoptera frugiperda (Lepidoptera: Noctuidae).\n\nOur results indicate that the tissues poorly respond to the infestation at an early time post-infestation of 8 h, even though the proliferation of the bacterial symbiont within the hemocoel is detected. Only 5 genes are differentially expressed in the fat body of the caterpillars. However, strong transcriptional responses are observed at a later time point of 15 h post-infestation in all three tissues. While few genes are differentially expressed in the midgut, tissue-specific panels of induced metalloprotease inhibitors, immune receptors and antimicrobial peptides together with several uncharacterized genes are up-regulated in the fat body and the hemocytes. In addition, among the most up-regulated genes, we identified new potential immune effectors, unique to Lepidoptera, for which we present evidence of acquisition by Horizontal Gene Transfer from bacteria.\n\nAltogether, these results pave the way for further functional studies of the mobilized genes involvement in the interaction with the EPN.\n\nAuthor summaryThe Fall Armyworm, Spodoptera frugiperda, is a major agricultural pest. The caterpillars cause extensive damage to crops of importance such as corn, rice, sorghum and cotton. Originally from the Americas, it is currently becoming invasive in other parts of the world, first in Africa in 2016, then in India and now in south-east Asia. Programs of biological control against insect pests are increasingly encouraged around the world and include the use of pathogens. Entomopathogenic nematodes such as Steinernema carpocapsae are already commercialized as organic pesticides. These nematodes live in the soil and enter the body of their insect preys. Once within the insects, they release their symbiotic bacteria (Xenorhabdus nematophila in this case), which infect and kill the host in a few hours. The nematodes can then feed on the dead insects, reproduce and resume their life cycle. It is a major challenge to understand how EPN achieve their pathogenicity as well as how the insects can resist them. Here we provide the foundation for such an interaction between EPN and a Lepidoptera. We analyzed the dynamic of transcriptional response in three insect tissues (midgut, fat body and hemocytes) upon infestation by EPN. Not many studies have been performed genome-wide on such an interaction, and none on a Lepidopteran model of economical importance. Our transcriptomic approach revealed some specificities of the Lepidopteran defense mechanisms. In particular, we discovered a set of genes, acquired in Lepidoptera from bacteria by Horizontal Gene Transfer, that probably encode proteins with antibiotic activity.

genomics↗