Biology subjects

Gigante, G.

Publications and source records attributed to Gigante, G..

5 recordsLinked to original sources

bioRxiv2026

The MosAICo ecosystem: bridging the taxonomic gap in vector surveillance with real-time entomological artificial intelligence

Mosquito-borne diseases represent an escalating global health threat, driven by climate change, urbanization, and the spread of invasive vectors into new territories. Effective surveillance is constrained by a critical taxonomic impediment: the rate of specimen collection far outpaces the capacity of expert entomologists to process and identify trap catches. To address this bottleneck we developed MosAICo, an integrated AI-powered ecosystem for automated mosquito species identification designed for real-world, national-scale entomological surveillance. The system combines a standardized benchtop imaging device with MosAICo-Net, a deep learning pipeline enabling efficient and principled open-set recognition and uncertainty quantification. Trained and evaluated on 12, 499 specimens spanning 15 species collected across Italy, the model identifies seven priority vector species while explicitly rejecting out-of-distribution specimens. On a geographically stratified held-out test set, MosAICo-Net achieved over 90% accuracy on target species, and an AUROC of 0.96 for out-of-distribution detection. Field validation across 20 Italian surveillance sites confirmed these results: 94% micro accuracy on 1, 470 field-collected target specimens and strong agreement with expert manual counts ([Formula] = 0.66). To assess cross-geographic generalizability, the system was further evaluated on 118 Aedes albopictus specimens collected at the fringe of the species invasion front in Ghana: a 97.4% accuracy with only a single specimen escalated to expert review, suggests that MosAICo is well-suited for deployment in distant and epidemiologically critical regions. The system processes up to 82 specimens per image, matching expert throughput at constant speed regardless of taxonomic complexity. By embedding uncertainty-aware AI within a standardized hardware-software pipeline, MosAICo acts as a scalable force multiplier for public health entomology, freeing expert attention for rare, invasive, or ambiguous specimens that require human validation.

ecology↗

bioRxiv2026

Bridging Neurons to Behaviour: A Generative Neural Engine Mechanistically Rejects the Independent Race Model

The brain produces robust, low-dimensional behaviour from variable, high-dimensional activity. The dominant account of action control, the Independent Race Model (IRM), explains stopping as a "Go" and a "Stop" process racing independently, and predicts behaviour accurately. But independence is a behavioural assumption never confronted with neural dynamics, and the same premotor neurons drive both processes. We therefore trained a generative Deep Markov Model on premotor activity from two macaques; trained on neural data alone, it emergently reproduces the full reaction-time distribution, validating it as a proxy for the neural hardware. Used for in silico experiments, this engine reveals systematic violations of both of the IRMs independence axioms, with violations emerging from the geometry of a single shared manifold. Apparent independence was never real: an artifact of observing behaviour without seeing the manifold that produces it.

neuroscience↗

bioRxiv2021

Signal neutrality, scalar property, and collapsing boundaries as consequences of a learned multi-time scale strategy

We postulate that three fundamental elements underlie a decision making process: perception of time passing, information processing in multiple timescales and reward maximisation. We build a simple reinforcement learning agent upon these principles that we train on a random dot-like task. Our results, similar to the experimental data, demonstrate three emerging signatures. (1) Signal neutrality: insensitivity to the signal coherence in the interval preceding the decision. (2) Scalar property: the mean of the response times varies widely for different signal coherences, yet the shape of the distributions stays almost unchanged. (3) Collapsing boundaries: the "effective" decision-making boundary changes over time in a manner reminiscent of the theoretical optimal. Removing the perception of time or the multiple timescales from the model does not preserve the distinguishing signatures. Our results suggest an alternative explanation for signal neutrality. We propose that it is not part of motor planning. It is part of the decision-making process and emerges from information processing on multiple timescales.

neuroscience↗

bioRxiv2018

Spontaneous activity emerging from an inferred network model captures complex temporal dynamics of spiking data

Inference methods are widely used to recover effective models from observed data. However, few studies attempted to investigate the dynamics of inferred models in neuroscience, and none, to our knowledge, at the network level. We introduce a principled modification of a widely used generalized linear model (GLM), and learn its structural and dynamic parameters from in-vitro spike data. The spontaneous activity of the new model captures prominent features of the non-stationary and non-linear dynamics displayed by the biological network, where the reference GLM largely fails, and also reflects fine-grained spatio-temporal dynamical features. Two ingredients were key for success. The first is a saturating transfer function: beyond its biological plausibility, it limits the neurons information transfer, improving robustness against endogenous and external noise. The second is a super-Poisson spikes generative mechanism; it accounts for the undersampling of the network, and allows the model neuron to flexibly incorporate the observed activity fluctuations.

neuroscience↗

bioRxiv2016

Density-based clustering: A ‘landscape view’ of multi-channel neural data for inference and dynamic complexity analysis

Simultaneous recordings from N electrodes generate N-dimensional time series that call for efficient representations to expose relevant aspects of the underlying dynamics.\n\nBinning the time series defines a sequence of neural activity vectors that populate the N-dimensional space as a density distribution, especially informative when the neural dynamics proceeds as a noisy path through metastable states (often a case of interest in neuroscience); this makes clustering in the N-dimensional space a natural choice.\n\nWe apply a variant of the mean-shift algorithm to perform such clustering, and validate it on an Hopfield network in the glassy phase, in which metastable states are largely uncorrelated from memory attractors.\n\nThe neural states identified as clusters centroids are then used to define a parsimonious parametrization of the synaptic matrix, which allows a significant improvement in inferring the synaptic couplings from the neural activities.\n\nWe next consider the more realistic case of a multi-modular spiking network, with spike-frequency adaptation inducing history-dependent effects; we develop a procedure, inspired by Boltzmann learning but extending its domain of application, to learn inter-module synaptic couplings so that the spiking network reproduces a prescribed pattern of spatial correlations.\n\nAfter clustering the activity generated by such multi-modular spiking networks, we cast their multi-dimensional dynamics in the form of the symbolic sequence of the clusters centroids; this representation naturally lends itself to complexity estimates that provide compact information on memory effects like those induced by spike-frequency adaptation. Specifically, to obtain a relative complexity measure we compare the Lempel-Ziv complexity of the actual centroid sequence to the one of Markov processes sharing the same transition probabilities between centroids; as an illustration, we show that the dependence of such relative complexity on the characteristic time scale of spike-frequency adaptation.

neuroscience↗